Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
SMARCA1P28370 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SMARCA1P28370 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
SMARCA1P28370 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SMARCA1P28370 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SMARCA1P28370 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC16.9■□□□□ 0.3
SMARCA1P28370 AL161932.2-201ENST00000435436 679 ntBASIC16.9■□□□□ 0.3
SMARCA1P28370 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC16.9■□□□□ 0.3
SMARCA1P28370 BX284668.4-201ENST00000453917 508 ntBASIC16.9■□□□□ 0.3
SMARCA1P28370 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC16.9■□□□□ 0.3
SMARCA1P28370 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC16.9■□□□□ 0.3
SMARCA1P28370 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC16.9■□□□□ 0.3
SMARCA1P28370 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
SMARCA1P28370 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SMARCA1P28370 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SMARCA1P28370 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.9■□□□□ 0.3
SMARCA1P28370 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.9■□□□□ 0.3
SMARCA1P28370 AC138028.6-201ENST00000616106 1482 ntBASIC16.9■□□□□ 0.3
SMARCA1P28370 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SMARCA1P28370 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.9■□□□□ 0.3
SMARCA1P28370 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SMARCA1P28370 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC16.9■□□□□ 0.3
SMARCA1P28370 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SMARCA1P28370 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SMARCA1P28370 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC16.89■□□□□ 0.3
SMARCA1P28370 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
SMARCA1P28370 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
SMARCA1P28370 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
SMARCA1P28370 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
SMARCA1P28370 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
SMARCA1P28370 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.3
SMARCA1P28370 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SMARCA1P28370 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SMARCA1P28370 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SMARCA1P28370 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SMARCA1P28370 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC16.89■□□□□ 0.29
SMARCA1P28370 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC16.89■□□□□ 0.29
SMARCA1P28370 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SMARCA1P28370 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
SMARCA1P28370 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SMARCA1P28370 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SMARCA1P28370 AGER-203ENST00000375065 665 ntTSL 2 BASIC16.89■□□□□ 0.29
SMARCA1P28370 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SMARCA1P28370 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SMARCA1P28370 XBP1P1-201ENST00000436573 652 ntBASIC16.89■□□□□ 0.29
SMARCA1P28370 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC16.89■□□□□ 0.29
SMARCA1P28370 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC16.89■□□□□ 0.29
SMARCA1P28370 AC009779.1-201ENST00000551138 283 ntBASIC16.89■□□□□ 0.29
SMARCA1P28370 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC16.89■□□□□ 0.29
SMARCA1P28370 SYT17-208ENST00000568433 812 ntTSL 3 BASIC16.89■□□□□ 0.29
SMARCA1P28370 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SMARCA1P28370 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SMARCA1P28370 AC008805.1-201ENST00000590892 364 ntBASIC16.89■□□□□ 0.29
SMARCA1P28370 AC104506.1-201ENST00000609247 429 ntBASIC16.89■□□□□ 0.29
SMARCA1P28370 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
SMARCA1P28370 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SMARCA1P28370 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SMARCA1P28370 AC244452.3-201ENST00000636814 210 ntBASIC16.89■□□□□ 0.29
SMARCA1P28370 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SMARCA1P28370 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC16.89■□□□□ 0.29
SMARCA1P28370 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SMARCA1P28370 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC16.89■□□□□ 0.29
SMARCA1P28370 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SMARCA1P28370 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SMARCA1P28370 AHCYP4-201ENST00000419201 1315 ntBASIC16.89■□□□□ 0.29
SMARCA1P28370 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SMARCA1P28370 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC16.89■□□□□ 0.29
SMARCA1P28370 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC16.89■□□□□ 0.29
SMARCA1P28370 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC16.89■□□□□ 0.29
SMARCA1P28370 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
SMARCA1P28370 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
SMARCA1P28370 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
SMARCA1P28370 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SMARCA1P28370 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SMARCA1P28370 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SMARCA1P28370 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC16.88■□□□□ 0.29
SMARCA1P28370 AC136759.1-202ENST00000530858 2194 ntBASIC16.88■□□□□ 0.29
SMARCA1P28370 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC16.88■□□□□ 0.29
SMARCA1P28370 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
SMARCA1P28370 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC16.88■□□□□ 0.29
SMARCA1P28370 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SMARCA1P28370 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SMARCA1P28370 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
SMARCA1P28370 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.88■□□□□ 0.29
SMARCA1P28370 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SMARCA1P28370 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SMARCA1P28370 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
SMARCA1P28370 AL008707.1-201ENST00000422498 534 ntBASIC16.88■□□□□ 0.29
SMARCA1P28370 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC16.88■□□□□ 0.29
SMARCA1P28370 AKR7A2P1-201ENST00000460134 915 ntBASIC16.88■□□□□ 0.29
SMARCA1P28370 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC16.88■□□□□ 0.29
SMARCA1P28370 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC16.88■□□□□ 0.29
SMARCA1P28370 CCNC-217ENST00000523985 958 ntTSL 2 BASIC16.88■□□□□ 0.29
SMARCA1P28370 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC16.88■□□□□ 0.29
SMARCA1P28370 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC16.88■□□□□ 0.29
SMARCA1P28370 PAM16-211ENST00000575848 518 ntTSL 3 BASIC16.88■□□□□ 0.29
SMARCA1P28370 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SMARCA1P28370 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SMARCA1P28370 AC243960.2-201ENST00000600996 747 ntBASIC16.88■□□□□ 0.29
SMARCA1P28370 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms