Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDC1P18827 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDC1P18827 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
SDC1P18827 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDC1P18827 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
SDC1P18827 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
SDC1P18827 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC14.15□□□□□ -0.15
SDC1P18827 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC14.14□□□□□ -0.15
SDC1P18827 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
SDC1P18827 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC14.14□□□□□ -0.15
SDC1P18827 AC011498.7-201ENST00000624986 2027 ntBASIC14.14□□□□□ -0.15
SDC1P18827 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
SDC1P18827 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 PIN1P1-201ENST00000412108 996 ntBASIC14.14□□□□□ -0.15
SDC1P18827 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC14.14□□□□□ -0.15
SDC1P18827 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC14.14□□□□□ -0.15
SDC1P18827 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.14□□□□□ -0.15
SDC1P18827 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
SDC1P18827 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC14.14□□□□□ -0.15
SDC1P18827 MESTP3-201ENST00000503460 968 ntBASIC14.14□□□□□ -0.15
SDC1P18827 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.14□□□□□ -0.15
SDC1P18827 SPCS2P1-201ENST00000561636 679 ntBASIC14.14□□□□□ -0.15
SDC1P18827 MIR6074-201ENST00000612054 107 ntBASIC14.14□□□□□ -0.15
SDC1P18827 AC145423.3-201ENST00000615987 467 ntBASIC14.14□□□□□ -0.15
SDC1P18827 AL359881.3-201ENST00000602640 1721 ntBASIC14.14□□□□□ -0.15
SDC1P18827 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
SDC1P18827 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC14.14□□□□□ -0.15
SDC1P18827 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC14.14□□□□□ -0.15
SDC1P18827 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
SDC1P18827 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC14.14□□□□□ -0.15
SDC1P18827 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.14□□□□□ -0.15
SDC1P18827 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.14□□□□□ -0.15
SDC1P18827 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.14□□□□□ -0.15
SDC1P18827 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
SDC1P18827 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.14□□□□□ -0.15
SDC1P18827 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
SDC1P18827 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC14.14□□□□□ -0.15
SDC1P18827 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDC1P18827 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC14.13□□□□□ -0.15
SDC1P18827 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SDC1P18827 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SDC1P18827 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SDC1P18827 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
SDC1P18827 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SDC1P18827 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
SDC1P18827 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SDC1P18827 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
SDC1P18827 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
SDC1P18827 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SDC1P18827 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SDC1P18827 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SDC1P18827 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SDC1P18827 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SDC1P18827 AC012441.1-201ENST00000446669 685 ntBASIC14.13□□□□□ -0.15
SDC1P18827 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.13□□□□□ -0.15
SDC1P18827 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.13□□□□□ -0.15
SDC1P18827 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC14.13□□□□□ -0.15
SDC1P18827 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
SDC1P18827 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.13□□□□□ -0.15
SDC1P18827 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC14.13□□□□□ -0.15
SDC1P18827 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SDC1P18827 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.13□□□□□ -0.15
SDC1P18827 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC14.13□□□□□ -0.15
SDC1P18827 AC138466.3-201ENST00000619983 221 ntBASIC14.13□□□□□ -0.15
SDC1P18827 RPSAP52-203ENST00000622976 1023 ntBASIC14.13□□□□□ -0.15
SDC1P18827 AP001002.3-201ENST00000623482 206 ntBASIC14.13□□□□□ -0.15
SDC1P18827 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC14.13□□□□□ -0.15
SDC1P18827 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC14.13□□□□□ -0.15
SDC1P18827 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
SDC1P18827 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
SDC1P18827 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
SDC1P18827 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC14.13□□□□□ -0.15
SDC1P18827 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SDC1P18827 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SDC1P18827 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SDC1P18827 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SDC1P18827 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
SDC1P18827 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms