Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HMGA1P17096 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HMGA1P17096 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HMGA1P17096 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HMGA1P17096 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HMGA1P17096 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC15.22■□□□□ 0.03
HMGA1P17096 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
HMGA1P17096 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HMGA1P17096 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HMGA1P17096 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HMGA1P17096 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
HMGA1P17096 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HMGA1P17096 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
HMGA1P17096 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC15.21■□□□□ 0.03
HMGA1P17096 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC15.21■□□□□ 0.03
HMGA1P17096 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HMGA1P17096 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
HMGA1P17096 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HMGA1P17096 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HMGA1P17096 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC15.21■□□□□ 0.03
HMGA1P17096 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC15.21■□□□□ 0.03
HMGA1P17096 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
HMGA1P17096 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HMGA1P17096 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC15.21■□□□□ 0.03
HMGA1P17096 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.21■□□□□ 0.03
HMGA1P17096 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HMGA1P17096 RNA5SP359-201ENST00000364838 113 ntBASIC15.21■□□□□ 0.03
HMGA1P17096 MIR33B-201ENST00000385104 96 ntBASIC15.21■□□□□ 0.03
HMGA1P17096 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HMGA1P17096 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HMGA1P17096 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HMGA1P17096 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC15.21■□□□□ 0.03
HMGA1P17096 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HMGA1P17096 RN7SL67P-201ENST00000492147 296 ntBASIC15.21■□□□□ 0.03
HMGA1P17096 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC15.21■□□□□ 0.03
HMGA1P17096 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
HMGA1P17096 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC15.21■□□□□ 0.03
HMGA1P17096 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC15.21■□□□□ 0.03
HMGA1P17096 AC007718.1-201ENST00000621078 280 ntBASIC15.21■□□□□ 0.03
HMGA1P17096 AL353726.2-201ENST00000623259 884 ntBASIC15.21■□□□□ 0.03
HMGA1P17096 RETN-203ENST00000629642 400 ntTSL 5 BASIC15.21■□□□□ 0.03
HMGA1P17096 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
HMGA1P17096 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HMGA1P17096 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HMGA1P17096 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.21■□□□□ 0.03
HMGA1P17096 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HMGA1P17096 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HMGA1P17096 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
HMGA1P17096 FAM90A2P-201ENST00000511144 1395 ntBASIC15.21■□□□□ 0.02
HMGA1P17096 FAM90A25P-201ENST00000528404 1395 ntBASIC15.21■□□□□ 0.02
HMGA1P17096 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
HMGA1P17096 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
HMGA1P17096 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
HMGA1P17096 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC15.21■□□□□ 0.02
HMGA1P17096 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC15.21■□□□□ 0.02
HMGA1P17096 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC15.21■□□□□ 0.02
HMGA1P17096 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
HMGA1P17096 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
HMGA1P17096 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
HMGA1P17096 AC144831.1-201ENST00000573312 2656 ntBASIC15.2■□□□□ 0.02
HMGA1P17096 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
HMGA1P17096 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGA1P17096 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGA1P17096 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGA1P17096 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
HMGA1P17096 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGA1P17096 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
HMGA1P17096 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.2■□□□□ 0.02
HMGA1P17096 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HMGA1P17096 CICP14-201ENST00000629111 2732 ntBASIC15.2■□□□□ 0.02
HMGA1P17096 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
HMGA1P17096 MBP-201ENST00000354542 575 ntTSL 2 BASIC15.2■□□□□ 0.02
HMGA1P17096 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC15.2■□□□□ 0.02
HMGA1P17096 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HMGA1P17096 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC15.2■□□□□ 0.02
HMGA1P17096 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC15.2■□□□□ 0.02
HMGA1P17096 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC15.2■□□□□ 0.02
HMGA1P17096 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HMGA1P17096 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC15.2■□□□□ 0.02
HMGA1P17096 AC019193.1-201ENST00000506678 823 ntBASIC15.2■□□□□ 0.02
HMGA1P17096 AC008723.1-201ENST00000506922 207 ntBASIC15.2■□□□□ 0.02
HMGA1P17096 CFL1-214ENST00000534769 758 ntTSL 2 BASIC15.2■□□□□ 0.02
HMGA1P17096 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HMGA1P17096 MIR4722-201ENST00000578292 60 ntBASIC15.2■□□□□ 0.02
HMGA1P17096 MIR3677-201ENST00000578964 60 ntBASIC15.2■□□□□ 0.02
HMGA1P17096 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HMGA1P17096 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC15.2■□□□□ 0.02
HMGA1P17096 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGA1P17096 LINC01783-202ENST00000614408 828 ntBASIC15.2■□□□□ 0.02
HMGA1P17096 BX284668.2-205ENST00000619677 828 ntBASIC15.2■□□□□ 0.02
HMGA1P17096 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC15.2■□□□□ 0.02
HMGA1P17096 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC15.2■□□□□ 0.02
HMGA1P17096 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
HMGA1P17096 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC15.2■□□□□ 0.02
HMGA1P17096 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGA1P17096 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC15.2■□□□□ 0.02
HMGA1P17096 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGA1P17096 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
HMGA1P17096 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC15.2■□□□□ 0.02
HMGA1P17096 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms