Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A2P12110 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A2P12110 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A2P12110 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
COL6A2P12110 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A2P12110 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A2P12110 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.71□□□□□ -0.05
COL6A2P12110 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A2P12110 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC14.71□□□□□ -0.05
COL6A2P12110 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.71□□□□□ -0.05
COL6A2P12110 ENPP7P5-201ENST00000541031 1031 ntBASIC14.71□□□□□ -0.05
COL6A2P12110 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC14.71□□□□□ -0.05
COL6A2P12110 AL359711.2-201ENST00000563105 872 ntBASIC14.71□□□□□ -0.05
COL6A2P12110 AC138761.1-201ENST00000584393 385 ntBASIC14.71□□□□□ -0.05
COL6A2P12110 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
COL6A2P12110 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.71□□□□□ -0.05
COL6A2P12110 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A2P12110 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A2P12110 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC14.71□□□□□ -0.05
COL6A2P12110 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A2P12110 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A2P12110 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A2P12110 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC14.71□□□□□ -0.05
COL6A2P12110 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.05
COL6A2P12110 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
COL6A2P12110 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL6A2P12110 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
COL6A2P12110 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL6A2P12110 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL6A2P12110 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL6A2P12110 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL6A2P12110 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.71□□□□□ -0.06
COL6A2P12110 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL6A2P12110 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL6A2P12110 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL6A2P12110 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL6A2P12110 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
COL6A2P12110 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC14.7□□□□□ -0.06
COL6A2P12110 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC14.7□□□□□ -0.06
COL6A2P12110 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
COL6A2P12110 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
COL6A2P12110 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
COL6A2P12110 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC14.7□□□□□ -0.06
COL6A2P12110 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.7□□□□□ -0.06
COL6A2P12110 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.7□□□□□ -0.06
COL6A2P12110 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
COL6A2P12110 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
COL6A2P12110 PNMT-202ENST00000394246 821 ntTSL 2 BASIC14.7□□□□□ -0.06
COL6A2P12110 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.7□□□□□ -0.06
COL6A2P12110 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.7□□□□□ -0.06
COL6A2P12110 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.7□□□□□ -0.06
COL6A2P12110 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.7□□□□□ -0.06
COL6A2P12110 GNAQP1-201ENST00000444815 1067 ntBASIC14.7□□□□□ -0.06
COL6A2P12110 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 GCOM2-201ENST00000509133 1104 ntBASIC14.7□□□□□ -0.06
COL6A2P12110 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.7□□□□□ -0.06
COL6A2P12110 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.7□□□□□ -0.06
COL6A2P12110 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC14.7□□□□□ -0.06
COL6A2P12110 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
COL6A2P12110 TMEM261P1-201ENST00000604899 340 ntBASIC14.7□□□□□ -0.06
COL6A2P12110 AC093512.1-201ENST00000617969 520 ntBASIC14.7□□□□□ -0.06
COL6A2P12110 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.7□□□□□ -0.06
COL6A2P12110 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC14.7□□□□□ -0.06
COL6A2P12110 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.7□□□□□ -0.06
COL6A2P12110 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 AC027612.1-201ENST00000445234 2395 ntBASIC14.7□□□□□ -0.06
COL6A2P12110 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
COL6A2P12110 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.7□□□□□ -0.06
COL6A2P12110 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC14.7□□□□□ -0.06
COL6A2P12110 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
COL6A2P12110 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC14.7□□□□□ -0.06
COL6A2P12110 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A2P12110 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A2P12110 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms