Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 RAN-210ENST00000541630 1475 ntTSL 2 BASIC17.38■□□□□ 0.37
HLA-DOAP06340 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DOAP06340 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
HLA-DOAP06340 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DOAP06340 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DOAP06340 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.38■□□□□ 0.37
HLA-DOAP06340 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DOAP06340 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC17.38■□□□□ 0.37
HLA-DOAP06340 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC17.38■□□□□ 0.37
HLA-DOAP06340 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC17.38■□□□□ 0.37
HLA-DOAP06340 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC17.38■□□□□ 0.37
HLA-DOAP06340 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC17.38■□□□□ 0.37
HLA-DOAP06340 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC17.38■□□□□ 0.37
HLA-DOAP06340 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DOAP06340 RN7SL190P-201ENST00000582519 257 ntBASIC17.38■□□□□ 0.37
HLA-DOAP06340 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC17.38■□□□□ 0.37
HLA-DOAP06340 AF254983.2-201ENST00000612331 135 ntBASIC17.38■□□□□ 0.37
HLA-DOAP06340 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DOAP06340 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DOAP06340 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DOAP06340 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DOAP06340 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DOAP06340 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DOAP06340 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 AC139712.1-201ENST00000378256 1875 ntBASIC17.37■□□□□ 0.37
HLA-DOAP06340 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DOAP06340 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DOAP06340 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DOAP06340 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DOAP06340 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DOAP06340 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DOAP06340 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DOAP06340 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DOAP06340 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DOAP06340 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DOAP06340 ELK2AP-201ENST00000392510 1007 ntBASIC17.37■□□□□ 0.37
HLA-DOAP06340 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DOAP06340 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 AC073150.1-201ENST00000450406 1084 ntBASIC17.37■□□□□ 0.37
HLA-DOAP06340 AC116345.2-201ENST00000512837 523 ntBASIC17.37■□□□□ 0.37
HLA-DOAP06340 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DOAP06340 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 RTN3P1-201ENST00000536295 711 ntBASIC17.37■□□□□ 0.37
HLA-DOAP06340 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DOAP06340 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 AC012044.1-201ENST00000603431 297 ntBASIC17.37■□□□□ 0.37
HLA-DOAP06340 AL353726.2-201ENST00000623259 884 ntBASIC17.37■□□□□ 0.37
HLA-DOAP06340 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DOAP06340 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DOAP06340 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DOAP06340 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DOAP06340 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DOAP06340 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC17.37■□□□□ 0.37
HLA-DOAP06340 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DOAP06340 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC17.36■□□□□ 0.37
HLA-DOAP06340 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DOAP06340 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC17.36■□□□□ 0.37
HLA-DOAP06340 STK26-204ENST00000481105 1835 ntTSL 2 BASIC17.36■□□□□ 0.37
HLA-DOAP06340 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
HLA-DOAP06340 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DOAP06340 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DOAP06340 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC17.36■□□□□ 0.37
HLA-DOAP06340 XBP1P1-201ENST00000436573 652 ntBASIC17.36■□□□□ 0.37
HLA-DOAP06340 AC234782.1-201ENST00000451950 919 ntBASIC17.36■□□□□ 0.37
HLA-DOAP06340 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC17.36■□□□□ 0.37
HLA-DOAP06340 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC17.36■□□□□ 0.37
HLA-DOAP06340 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC17.36■□□□□ 0.37
HLA-DOAP06340 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC17.36■□□□□ 0.37
HLA-DOAP06340 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC17.36■□□□□ 0.37
HLA-DOAP06340 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC17.36■□□□□ 0.37
HLA-DOAP06340 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC17.36■□□□□ 0.37
HLA-DOAP06340 AL133499.1-201ENST00000596207 608 ntBASIC17.36■□□□□ 0.37
HLA-DOAP06340 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DOAP06340 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DOAP06340 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DOAP06340 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
HLA-DOAP06340 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DOAP06340 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DOAP06340 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DOAP06340 AC018629.1-201ENST00000623381 1736 ntBASIC17.35■□□□□ 0.37
HLA-DOAP06340 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms