Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
COL3A1P02461 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
COL3A1P02461 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
COL3A1P02461 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL3A1P02461 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL3A1P02461 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC19.17■□□□□ 0.66
COL3A1P02461 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL3A1P02461 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC19.17■□□□□ 0.66
COL3A1P02461 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL3A1P02461 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL3A1P02461 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL3A1P02461 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL3A1P02461 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC19.16■□□□□ 0.66
COL3A1P02461 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC19.16■□□□□ 0.66
COL3A1P02461 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
COL3A1P02461 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC19.16■□□□□ 0.66
COL3A1P02461 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC19.16■□□□□ 0.66
COL3A1P02461 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC19.16■□□□□ 0.66
COL3A1P02461 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC19.16■□□□□ 0.66
COL3A1P02461 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
COL3A1P02461 AC138894.2-201ENST00000602838 371 ntBASIC19.16■□□□□ 0.66
COL3A1P02461 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC19.16■□□□□ 0.66
COL3A1P02461 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC19.16■□□□□ 0.66
COL3A1P02461 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC19.16■□□□□ 0.66
COL3A1P02461 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
COL3A1P02461 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC19.16■□□□□ 0.66
COL3A1P02461 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC19.16■□□□□ 0.66
COL3A1P02461 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
COL3A1P02461 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
COL3A1P02461 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC19.16■□□□□ 0.66
COL3A1P02461 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL3A1P02461 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC19.16■□□□□ 0.66
COL3A1P02461 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC19.16■□□□□ 0.66
COL3A1P02461 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC19.16■□□□□ 0.66
COL3A1P02461 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC19.16■□□□□ 0.66
COL3A1P02461 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC19.16■□□□□ 0.66
COL3A1P02461 AC016629.1-201ENST00000596579 586 ntBASIC19.16■□□□□ 0.66
COL3A1P02461 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC19.16■□□□□ 0.66
COL3A1P02461 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC19.16■□□□□ 0.66
COL3A1P02461 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC19.16■□□□□ 0.66
COL3A1P02461 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
COL3A1P02461 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL3A1P02461 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
COL3A1P02461 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL3A1P02461 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL3A1P02461 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
COL3A1P02461 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL3A1P02461 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
COL3A1P02461 CICP16-201ENST00000502609 2813 ntBASIC19.15■□□□□ 0.66
COL3A1P02461 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL3A1P02461 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
COL3A1P02461 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC19.15■□□□□ 0.66
COL3A1P02461 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC19.15■□□□□ 0.66
COL3A1P02461 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC19.15■□□□□ 0.66
COL3A1P02461 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL3A1P02461 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL3A1P02461 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC19.15■□□□□ 0.66
COL3A1P02461 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL3A1P02461 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL3A1P02461 MIR645-201ENST00000385283 94 ntBASIC19.15■□□□□ 0.66
COL3A1P02461 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL3A1P02461 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
COL3A1P02461 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC19.15■□□□□ 0.66
COL3A1P02461 RPSAP15-201ENST00000448168 861 ntBASIC19.15■□□□□ 0.66
COL3A1P02461 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL3A1P02461 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
COL3A1P02461 KRT8P1-201ENST00000557533 1207 ntBASIC19.15■□□□□ 0.66
COL3A1P02461 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC19.15■□□□□ 0.66
COL3A1P02461 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
COL3A1P02461 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
COL3A1P02461 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL3A1P02461 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
COL3A1P02461 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL3A1P02461 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC19.14■□□□□ 0.66
COL3A1P02461 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL3A1P02461 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
COL3A1P02461 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms