Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
HMGB3O15347 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC12.02□□□□□ -0.49
HMGB3O15347 AC055811.4-201ENST00000624039 1754 ntBASIC12.02□□□□□ -0.49
HMGB3O15347 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
HMGB3O15347 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
HMGB3O15347 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC12.02□□□□□ -0.49
HMGB3O15347 NLRP1-202ENST00000269280 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
HMGB3O15347 AC012508.2-201ENST00000567613 1472 ntBASIC12.02□□□□□ -0.49
HMGB3O15347 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC12.01□□□□□ -0.49
HMGB3O15347 ABCC8-201ENST00000302539 4923 ntAPPRIS ALT1 TSL 5 BASIC12.01□□□□□ -0.49
HMGB3O15347 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC12.01□□□□□ -0.49
HMGB3O15347 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HMGB3O15347 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC12.01□□□□□ -0.49
HMGB3O15347 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HMGB3O15347 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
HMGB3O15347 ARHGAP20-202ENST00000524756 6180 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
HMGB3O15347 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC12.01□□□□□ -0.49
HMGB3O15347 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HMGB3O15347 STARD13-201ENST00000255486 5798 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HMGB3O15347 STARD13-204ENST00000399365 5784 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HMGB3O15347 ALDH2-201ENST00000261733 9569 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HMGB3O15347 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC12.01□□□□□ -0.49
HMGB3O15347 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC12.01□□□□□ -0.49
HMGB3O15347 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HMGB3O15347 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HMGB3O15347 PP14571-201ENST00000404327 934 ntTSL 2 BASIC12.01□□□□□ -0.49
HMGB3O15347 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC12.01□□□□□ -0.49
HMGB3O15347 AC098831.1-202ENST00000438821 336 ntBASIC12.01□□□□□ -0.49
HMGB3O15347 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC12.01□□□□□ -0.49
HMGB3O15347 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HMGB3O15347 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC12.01□□□□□ -0.49
HMGB3O15347 AC018845.2-201ENST00000568326 409 ntBASIC12.01□□□□□ -0.49
HMGB3O15347 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC12.01□□□□□ -0.49
HMGB3O15347 TBCB-205ENST00000585746 875 ntTSL 3 BASIC12.01□□□□□ -0.49
HMGB3O15347 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HMGB3O15347 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC12.01□□□□□ -0.49
HMGB3O15347 TSN-212ENST00000536142 3328 ntTSL 2 BASIC12.01□□□□□ -0.49
HMGB3O15347 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
HMGB3O15347 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
HMGB3O15347 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.01□□□□□ -0.49
HMGB3O15347 ADCY1-201ENST00000297323 12503 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HMGB3O15347 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HMGB3O15347 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC12.01□□□□□ -0.49
HMGB3O15347 ZNF566-204ENST00000434377 5197 ntAPPRIS P3 TSL 2 BASIC12.01□□□□□ -0.49
HMGB3O15347 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC12.01□□□□□ -0.49
HMGB3O15347 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HMGB3O15347 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC12.01□□□□□ -0.49
HMGB3O15347 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
HMGB3O15347 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HMGB3O15347 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC12.01□□□□□ -0.49
HMGB3O15347 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
HMGB3O15347 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC12.01□□□□□ -0.49
HMGB3O15347 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC12.01□□□□□ -0.49
HMGB3O15347 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
HMGB3O15347 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HMGB3O15347 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HMGB3O15347 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC12.01□□□□□ -0.49
HMGB3O15347 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC12.01□□□□□ -0.49
HMGB3O15347 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC12.01□□□□□ -0.49
HMGB3O15347 PCDHGA12-201ENST00000252085 4747 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
HMGB3O15347 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC12.01□□□□□ -0.49
HMGB3O15347 POLR1B-216ENST00000537335 4961 ntTSL 2 BASIC12□□□□□ -0.49
HMGB3O15347 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC12□□□□□ -0.49
HMGB3O15347 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 MYO10-210ENST00000513610 8038 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 INCENP-202ENST00000394818 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC12□□□□□ -0.49
HMGB3O15347 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC12□□□□□ -0.49
HMGB3O15347 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC12□□□□□ -0.49
HMGB3O15347 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 CAMTA2-204ENST00000414043 4589 ntTSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 PLEC-204ENST00000354958 14751 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC12□□□□□ -0.49
HMGB3O15347 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
HMGB3O15347 CRCP-205ENST00000431089 942 ntTSL 2 BASIC12□□□□□ -0.49
HMGB3O15347 KRT18P67-201ENST00000432816 1264 ntBASIC12□□□□□ -0.49
HMGB3O15347 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC12□□□□□ -0.49
HMGB3O15347 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC12□□□□□ -0.49
HMGB3O15347 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC12□□□□□ -0.49
HMGB3O15347 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC12□□□□□ -0.49
HMGB3O15347 BMF-207ENST00000559701 630 ntTSL 3 BASIC12□□□□□ -0.49
HMGB3O15347 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC12□□□□□ -0.49
HMGB3O15347 AC027307.2-201ENST00000591252 911 ntBASIC12□□□□□ -0.49
HMGB3O15347 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC12□□□□□ -0.49
HMGB3O15347 CAMTA2-202ENST00000361571 4777 ntTSL 1 (best) BASIC12□□□□□ -0.49
HMGB3O15347 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms