Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 CU634019.7-201ENST00000624153 1185 ntBASIC14.51□□□□□ -0.09
VPS4AQ9UN37 FP236241.2-201ENST00000624906 1185 ntBASIC14.51□□□□□ -0.09
VPS4AQ9UN37 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 AC007787.1-201ENST00000588095 1583 ntBASIC14.51□□□□□ -0.09
VPS4AQ9UN37 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 ELK2AP-201ENST00000392510 1007 ntBASIC14.5□□□□□ -0.09
VPS4AQ9UN37 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 GOLGA2P4-201ENST00000441462 777 ntBASIC14.5□□□□□ -0.09
VPS4AQ9UN37 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 AC036164.1-201ENST00000570544 333 ntBASIC14.5□□□□□ -0.09
VPS4AQ9UN37 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.5□□□□□ -0.09
VPS4AQ9UN37 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS4AQ9UN37 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 ACTG1P3-201ENST00000431775 1114 ntBASIC14.49□□□□□ -0.09
VPS4AQ9UN37 YBX1P6-201ENST00000442962 1002 ntBASIC14.49□□□□□ -0.09
VPS4AQ9UN37 AC108725.1-201ENST00000495472 409 ntBASIC14.49□□□□□ -0.09
VPS4AQ9UN37 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms