Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 AC018735.1-201ENST00000437208 1502 ntBASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 LINC00528-201ENST00000600723 2160 ntBASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 CALR4P-201ENST00000431943 946 ntBASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 OARD1-204ENST00000464633 717 ntTSL 2 BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 MARK2P5-201ENST00000507649 634 ntBASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 RBM8B-201ENST00000555532 525 ntBASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 MIR3615-201ENST00000581999 87 ntBASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 MIR6074-201ENST00000612054 107 ntBASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 Z98259.2-201ENST00000641583 609 ntBASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CHMP4AQ9BY43 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 KHSRPP1-201ENST00000427983 1768 ntBASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 AC011742.3-201ENST00000439053 820 ntBASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 EIF4HP1-201ENST00000453115 687 ntBASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 RNMTL1P1-201ENST00000454103 560 ntBASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 EID1-202ENST00000560490 584 ntTSL 3 BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 AL132994.2-201ENST00000603120 687 ntBASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 AC090164.2-201ENST00000611487 516 ntBASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 FGD5P1-202ENST00000614866 2498 ntBASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
CHMP4AQ9BY43 GSN-215ENST00000545652 2428 ntTSL 2 BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms