Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 KRT8P35-201ENST00000483942 1338 ntBASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 DNAJB3-201ENST00000446806 729 ntBASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 SLBP-205ENST00000488267 987 ntTSL 2 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 AC069262.1-201ENST00000539058 672 ntBASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 DUX4L47-201ENST00000566374 394 ntBASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 AL138828.2-201ENST00000615812 383 ntBASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 AL158212.4-201ENST00000624062 1286 ntBASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 AC023794.5-201ENST00000564380 2157 ntBASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 AC215219.1-201ENST00000400706 1817 ntBASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28BQ9BUN5 DRD5P1-201ENST00000456605 1438 ntBASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 AL138799.1-201ENST00000448213 1675 ntBASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 NUS1P3-201ENST00000423502 862 ntBASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 PPP6R2P1-201ENST00000450880 1275 ntBASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 POLD2P1-201ENST00000511220 997 ntBASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 ZNF890P-202ENST00000530367 1156 ntBASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 C12orf43-202ENST00000445832 2397 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 CICP16-201ENST00000502609 2813 ntBASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms