Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ABCA3Q99758 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ABCA3Q99758 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
ABCA3Q99758 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC18.99■□□□□ 0.63
ABCA3Q99758 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
ABCA3Q99758 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
ABCA3Q99758 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC18.99■□□□□ 0.63
ABCA3Q99758 KRT8P30-201ENST00000432100 650 ntBASIC18.99■□□□□ 0.63
ABCA3Q99758 VDAC1P11-201ENST00000458323 852 ntBASIC18.99■□□□□ 0.63
ABCA3Q99758 HNRNPA3P6-201ENST00000472163 1006 ntBASIC18.99■□□□□ 0.63
ABCA3Q99758 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC18.99■□□□□ 0.63
ABCA3Q99758 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
ABCA3Q99758 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
ABCA3Q99758 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC18.99■□□□□ 0.63
ABCA3Q99758 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC18.99■□□□□ 0.63
ABCA3Q99758 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC18.99■□□□□ 0.63
ABCA3Q99758 MX1-218ENST00000619682 1980 ntTSL 5 BASIC18.99■□□□□ 0.63
ABCA3Q99758 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
ABCA3Q99758 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ABCA3Q99758 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ABCA3Q99758 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ABCA3Q99758 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ABCA3Q99758 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
ABCA3Q99758 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC18.98■□□□□ 0.63
ABCA3Q99758 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
ABCA3Q99758 RNA5SP491-201ENST00000362936 118 ntBASIC18.98■□□□□ 0.63
ABCA3Q99758 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC18.98■□□□□ 0.63
ABCA3Q99758 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ABCA3Q99758 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC18.98■□□□□ 0.63
ABCA3Q99758 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ABCA3Q99758 AL807740.1-201ENST00000636971 567 ntTSL 4 BASIC18.98■□□□□ 0.63
ABCA3Q99758 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ABCA3Q99758 AC008536.3-201ENST00000623282 1599 ntBASIC18.98■□□□□ 0.63
ABCA3Q99758 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ABCA3Q99758 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
ABCA3Q99758 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
ABCA3Q99758 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC18.98■□□□□ 0.63
ABCA3Q99758 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.97■□□□□ 0.63
ABCA3Q99758 U3.5-201ENST00000363448 216 ntBASIC18.97■□□□□ 0.63
ABCA3Q99758 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ABCA3Q99758 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
ABCA3Q99758 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC18.97■□□□□ 0.63
ABCA3Q99758 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
ABCA3Q99758 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC18.97■□□□□ 0.63
ABCA3Q99758 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ABCA3Q99758 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC18.97■□□□□ 0.63
ABCA3Q99758 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
ABCA3Q99758 AC004466.2-201ENST00000614749 516 ntBASIC18.97■□□□□ 0.63
ABCA3Q99758 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ABCA3Q99758 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ABCA3Q99758 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
ABCA3Q99758 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
ABCA3Q99758 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ABCA3Q99758 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
ABCA3Q99758 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC18.97■□□□□ 0.63
ABCA3Q99758 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
ABCA3Q99758 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC18.97■□□□□ 0.63
ABCA3Q99758 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC18.97■□□□□ 0.63
ABCA3Q99758 U73169.1-201ENST00000395152 367 ntBASIC18.97■□□□□ 0.63
ABCA3Q99758 AL121949.3-201ENST00000406684 385 ntBASIC18.97■□□□□ 0.63
ABCA3Q99758 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
ABCA3Q99758 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC18.97■□□□□ 0.63
ABCA3Q99758 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC18.97■□□□□ 0.63
ABCA3Q99758 SRP14-208ENST00000560773 468 ntTSL 3 BASIC18.97■□□□□ 0.63
ABCA3Q99758 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC18.97■□□□□ 0.63
ABCA3Q99758 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
ABCA3Q99758 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ABCA3Q99758 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC18.96■□□□□ 0.63
ABCA3Q99758 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ABCA3Q99758 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ABCA3Q99758 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
ABCA3Q99758 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ABCA3Q99758 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
ABCA3Q99758 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC18.96■□□□□ 0.63
ABCA3Q99758 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ABCA3Q99758 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
ABCA3Q99758 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
ABCA3Q99758 SSR4-202ENST00000370085 526 ntTSL 2 BASIC18.96■□□□□ 0.63
ABCA3Q99758 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ABCA3Q99758 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
ABCA3Q99758 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC18.96■□□□□ 0.63
ABCA3Q99758 AC098657.1-201ENST00000416270 1135 ntBASIC18.96■□□□□ 0.63
ABCA3Q99758 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC18.96■□□□□ 0.63
ABCA3Q99758 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ABCA3Q99758 NALT1-202ENST00000450304 437 ntTSL 3 BASIC18.96■□□□□ 0.63
ABCA3Q99758 TREX1-203ENST00000456089 629 ntTSL 3 BASIC18.96■□□□□ 0.63
ABCA3Q99758 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC18.96■□□□□ 0.63
ABCA3Q99758 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ABCA3Q99758 BMF-206ENST00000558774 671 ntTSL 3 BASIC18.96■□□□□ 0.63
ABCA3Q99758 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
ABCA3Q99758 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC18.96■□□□□ 0.63
ABCA3Q99758 MED11-202ENST00000573708 802 ntTSL 2 BASIC18.96■□□□□ 0.63
ABCA3Q99758 AL357143.1-203ENST00000639750 881 ntBASIC18.96■□□□□ 0.63
ABCA3Q99758 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ABCA3Q99758 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
ABCA3Q99758 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ABCA3Q99758 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC18.96■□□□□ 0.63
ABCA3Q99758 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC18.96■□□□□ 0.63
ABCA3Q99758 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
ABCA3Q99758 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms