Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 FABP5-202ENST00000396359 986 ntTSL 5 BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 TMEM198B-204ENST00000484016 896 ntBASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 CICP8-201ENST00000455800 2813 ntBASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NUDCD3Q8IVD9 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
NUDCD3Q8IVD9 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.03
NUDCD3Q8IVD9 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC14.83□□□□□ -0.03
NUDCD3Q8IVD9 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
NUDCD3Q8IVD9 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
NUDCD3Q8IVD9 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 CICP16-201ENST00000502609 2813 ntBASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 AL645937.2-201ENST00000396808 931 ntBASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 PPP6R2P1-201ENST00000450880 1275 ntBASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 AL512356.2-201ENST00000546955 174 ntBASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 AL138828.2-201ENST00000615812 383 ntBASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 RN7SL832P-201ENST00000607781 1756 ntBASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NUDCD3Q8IVD9 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
NUDCD3Q8IVD9 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NUDCD3Q8IVD9 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NUDCD3Q8IVD9 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.82□□□□□ -0.04
NUDCD3Q8IVD9 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC14.82□□□□□ -0.04
NUDCD3Q8IVD9 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
NUDCD3Q8IVD9 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC14.82□□□□□ -0.04
NUDCD3Q8IVD9 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
NUDCD3Q8IVD9 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
NUDCD3Q8IVD9 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
NUDCD3Q8IVD9 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC14.82□□□□□ -0.04
NUDCD3Q8IVD9 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
NUDCD3Q8IVD9 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NUDCD3Q8IVD9 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
NUDCD3Q8IVD9 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NUDCD3Q8IVD9 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
NUDCD3Q8IVD9 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NUDCD3Q8IVD9 AC069262.1-201ENST00000539058 672 ntBASIC14.82□□□□□ -0.04
NUDCD3Q8IVD9 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.82□□□□□ -0.04
NUDCD3Q8IVD9 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC14.82□□□□□ -0.04
NUDCD3Q8IVD9 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 8.9 ms