Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 LGALS3BP-201ENST00000262776 2405 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 MPHOSPH10-201ENST00000244230 2484 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 SH3KBP1-202ENST00000379698 2678 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 MGAT4EP-201ENST00000330493 2810 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 CHD1L-202ENST00000369258 2967 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 SLC47A1-201ENST00000270570 3280 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 SRRM1-201ENST00000323848 4011 ntAPPRIS P2 TSL 1 (best) BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 SLITRK3-201ENST00000241274 4391 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 AKAP8-201ENST00000269701 3670 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 YEATS2-201ENST00000305135 6506 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 BTBD11-202ENST00000357167 4107 ntAPPRIS ALT2 TSL 2 BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 FCRLA-206ENST00000367949 1792 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 TBL1X-202ENST00000380961 4674 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 IGHGP-201ENST00000390555 1178 ntBASIC9.18□□□□□ -0.94
LINC00643Q86TS7 LILRB3-203ENST00000391750 2848 ntAPPRIS P3 TSL 5 BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 PHF21B-202ENST00000396103 3540 ntAPPRIS ALT2 TSL 2 BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 SYS1-203ENST00000414310 795 ntTSL 3 BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 LGALS8-208ENST00000416919 6097 ntTSL 5 BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 CRYGFP-201ENST00000418459 633 ntBASIC9.18□□□□□ -0.94
LINC00643Q86TS7 QRICH1-204ENST00000424300 3009 ntAPPRIS P1 TSL 2 BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 AC008758.4-201ENST00000435033 2593 ntAPPRIS P1 TSL 2 BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 TMX1-201ENST00000457354 3995 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 ATG13-211ENST00000528494 2351 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 EGLN3-205ENST00000547327 2849 ntBASIC9.18□□□□□ -0.94
LINC00643Q86TS7 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 AL023875.1-201ENST00000640777 796 ntBASIC9.18□□□□□ -0.94
LINC00643Q86TS7 AL590440.2-201ENST00000641973 1595 ntBASIC9.18□□□□□ -0.94
LINC00643Q86TS7 RNF170-206ENST00000527424 3880 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 ZNF140-202ENST00000355557 3550 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 SLC5A9-203ENST00000438567 3195 ntAPPRIS P3 TSL 1 (best) BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 KIF13A-201ENST00000259711 5941 ntAPPRIS P4 TSL 1 (best) BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 NR1D1-201ENST00000246672 2772 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
LINC00643Q86TS7 GNG4-204ENST00000450593 4978 ntAPPRIS P1 TSL 4 BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 CAST-223ENST00000508608 2425 ntAPPRIS ALT2 TSL 2 BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 PRKAG3-203ENST00000439262 2301 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 ZBED4-201ENST00000216268 6893 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 AL445250.1-201ENST00000641671 2259 ntBASIC9.17□□□□□ -0.94
LINC00643Q86TS7 CMC2-201ENST00000219400 10301 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 GUCY2EP-203ENST00000531117 1918 ntBASIC9.17□□□□□ -0.94
LINC00643Q86TS7 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 EFHD1-203ENST00000409708 1817 ntTSL 2 BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 HAO1-201ENST00000378789 1777 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 SPTB-204ENST00000389722 10063 ntTSL 2 BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 IL21R-201ENST00000337929 4849 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 SLC39A14-204ENST00000381237 4641 ntAPPRIS ALT2 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 PCDHGA7-201ENST00000518325 4605 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 DDX11-223ENST00000542838 3079 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 PRKN-206ENST00000366898 4180 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 SLC2A5-202ENST00000377424 4165 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 PCDHA4-202ENST00000512229 4163 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 SNHG14-212ENST00000549804 7844 ntTSL 5 BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 HCG4-201ENST00000418983 998 ntBASIC9.17□□□□□ -0.94
LINC00643Q86TS7 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 FAAHP1-202ENST00000446499 1238 ntBASIC9.17□□□□□ -0.94
LINC00643Q86TS7 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 SLC25A25-205ENST00000432073 3678 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 ITFG2-201ENST00000228799 2361 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 PIK3R5-202ENST00000447110 4495 ntAPPRIS P2 TSL 5 BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 ARHGAP30-201ENST00000368013 4394 ntAPPRIS P1 TSL 2 BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 CLTC-215ENST00000621829 8587 ntAPPRIS ALT1 TSL 2 BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 FP325332.1-201ENST00000624818 2045 ntBASIC9.17□□□□□ -0.94
LINC00643Q86TS7 RUFY4-202ENST00000374155 2977 ntTSL 2 BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 CIZ1-205ENST00000372948 2858 ntAPPRIS ALT2 TSL 2 BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 TMEM86A-201ENST00000280734 3595 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 PEX12-201ENST00000225873 2675 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 HSP90AA1-202ENST00000334701 3510 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
LINC00643Q86TS7 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms