Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
H3F3AP84243 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
H3F3AP84243 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC13.31□□□□□ -0.28
H3F3AP84243 MRPL37P1-201ENST00000592451 1337 ntBASIC13.31□□□□□ -0.28
H3F3AP84243 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
H3F3AP84243 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
H3F3AP84243 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
H3F3AP84243 AC113367.3-201ENST00000508316 1912 ntBASIC13.31□□□□□ -0.28
H3F3AP84243 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
H3F3AP84243 PCDHA3-202ENST00000532566 4594 ntBASIC13.3□□□□□ -0.28
H3F3AP84243 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
H3F3AP84243 AC140479.7-201ENST00000636301 2332 ntBASIC13.3□□□□□ -0.28
H3F3AP84243 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC13.3□□□□□ -0.28
H3F3AP84243 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
H3F3AP84243 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC13.3□□□□□ -0.28
H3F3AP84243 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
H3F3AP84243 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
H3F3AP84243 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
H3F3AP84243 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
H3F3AP84243 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC13.3□□□□□ -0.28
H3F3AP84243 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC13.3□□□□□ -0.28
H3F3AP84243 AC092135.3-201ENST00000624151 1846 ntBASIC13.3□□□□□ -0.28
H3F3AP84243 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
H3F3AP84243 MPI-203ENST00000535694 1523 ntTSL 2 BASIC13.3□□□□□ -0.28
H3F3AP84243 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
H3F3AP84243 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
H3F3AP84243 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC13.3□□□□□ -0.28
H3F3AP84243 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
H3F3AP84243 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
H3F3AP84243 TPO-206ENST00000382269 1155 ntTSL 5 BASIC13.3□□□□□ -0.28
H3F3AP84243 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
H3F3AP84243 STX1A-203ENST00000395155 783 ntTSL 2 BASIC13.3□□□□□ -0.28
H3F3AP84243 AL136309.1-201ENST00000403917 691 ntBASIC13.3□□□□□ -0.28
H3F3AP84243 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC13.3□□□□□ -0.28
H3F3AP84243 CNN2P10-201ENST00000443067 918 ntBASIC13.3□□□□□ -0.28
H3F3AP84243 CHMP1AP1-201ENST00000445563 662 ntBASIC13.3□□□□□ -0.28
H3F3AP84243 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC13.3□□□□□ -0.28
H3F3AP84243 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
H3F3AP84243 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC13.3□□□□□ -0.28
H3F3AP84243 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
H3F3AP84243 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC13.3□□□□□ -0.28
H3F3AP84243 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC13.3□□□□□ -0.28
H3F3AP84243 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
H3F3AP84243 AP001002.3-201ENST00000623482 206 ntBASIC13.3□□□□□ -0.28
H3F3AP84243 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
H3F3AP84243 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
H3F3AP84243 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
H3F3AP84243 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
H3F3AP84243 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC13.3□□□□□ -0.28
H3F3AP84243 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC13.3□□□□□ -0.28
H3F3AP84243 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
H3F3AP84243 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
H3F3AP84243 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
H3F3AP84243 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
H3F3AP84243 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
H3F3AP84243 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
H3F3AP84243 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
H3F3AP84243 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
H3F3AP84243 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
H3F3AP84243 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC13.3□□□□□ -0.28
H3F3AP84243 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
H3F3AP84243 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC13.3□□□□□ -0.28
H3F3AP84243 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
H3F3AP84243 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
H3F3AP84243 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC13.3□□□□□ -0.28
H3F3AP84243 R3HDM2P2-201ENST00000401880 2116 ntBASIC13.3□□□□□ -0.28
H3F3AP84243 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
H3F3AP84243 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC13.3□□□□□ -0.28
H3F3AP84243 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
H3F3AP84243 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC13.29□□□□□ -0.28
H3F3AP84243 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
H3F3AP84243 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
H3F3AP84243 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
H3F3AP84243 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
H3F3AP84243 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
H3F3AP84243 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
H3F3AP84243 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
H3F3AP84243 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
H3F3AP84243 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC13.29□□□□□ -0.28
H3F3AP84243 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
H3F3AP84243 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
H3F3AP84243 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
H3F3AP84243 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC13.29□□□□□ -0.28
H3F3AP84243 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC13.29□□□□□ -0.28
H3F3AP84243 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
H3F3AP84243 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
H3F3AP84243 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
H3F3AP84243 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
H3F3AP84243 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
H3F3AP84243 AC099336.1-201ENST00000417053 1171 ntBASIC13.29□□□□□ -0.28
H3F3AP84243 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
H3F3AP84243 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
H3F3AP84243 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC13.29□□□□□ -0.28
H3F3AP84243 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC13.29□□□□□ -0.28
H3F3AP84243 IGHV3-71-201ENST00000523324 359 ntBASIC13.29□□□□□ -0.28
H3F3AP84243 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC13.29□□□□□ -0.28
H3F3AP84243 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC13.29□□□□□ -0.28
H3F3AP84243 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC13.29□□□□□ -0.28
H3F3AP84243 NOP2-220ENST00000545915 630 ntTSL 2 BASIC13.29□□□□□ -0.28
H3F3AP84243 DUX4L45-201ENST00000566406 1057 ntBASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms