Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
LMO4P61968 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
LMO4P61968 FAM90A2P-201ENST00000511144 1395 ntBASIC12.08□□□□□ -0.48
LMO4P61968 FAM90A25P-201ENST00000528404 1395 ntBASIC12.08□□□□□ -0.48
LMO4P61968 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LMO4P61968 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
LMO4P61968 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LMO4P61968 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
LMO4P61968 MIR33B-201ENST00000385104 96 ntBASIC12.08□□□□□ -0.48
LMO4P61968 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC12.08□□□□□ -0.48
LMO4P61968 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC12.08□□□□□ -0.48
LMO4P61968 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC12.08□□□□□ -0.48
LMO4P61968 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC12.08□□□□□ -0.48
LMO4P61968 OR2R1P-201ENST00000441404 914 ntBASIC12.08□□□□□ -0.48
LMO4P61968 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC12.08□□□□□ -0.48
LMO4P61968 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC12.08□□□□□ -0.48
LMO4P61968 AC008723.1-201ENST00000506922 207 ntBASIC12.08□□□□□ -0.48
LMO4P61968 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC12.08□□□□□ -0.48
LMO4P61968 PGAM1P5-201ENST00000548011 764 ntBASIC12.08□□□□□ -0.48
LMO4P61968 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC12.08□□□□□ -0.48
LMO4P61968 MIR4722-201ENST00000578292 60 ntBASIC12.08□□□□□ -0.48
LMO4P61968 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
LMO4P61968 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC12.08□□□□□ -0.48
LMO4P61968 AL109837.1-201ENST00000603272 613 ntBASIC12.08□□□□□ -0.48
LMO4P61968 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LMO4P61968 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
LMO4P61968 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LMO4P61968 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC12.08□□□□□ -0.48
LMO4P61968 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC12.08□□□□□ -0.48
LMO4P61968 MBP-202ENST00000355994 2772 ntTSL 5 BASIC12.08□□□□□ -0.48
LMO4P61968 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC12.08□□□□□ -0.48
LMO4P61968 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LMO4P61968 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LMO4P61968 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
LMO4P61968 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LMO4P61968 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
LMO4P61968 MECR-202ENST00000373791 2416 ntTSL 2 BASIC12.08□□□□□ -0.48
LMO4P61968 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
LMO4P61968 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
LMO4P61968 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
LMO4P61968 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LMO4P61968 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
LMO4P61968 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC12.08□□□□□ -0.48
LMO4P61968 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LMO4P61968 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC12.08□□□□□ -0.48
LMO4P61968 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC12.08□□□□□ -0.48
LMO4P61968 AJ011931.1-201ENST00000618749 2492 ntBASIC12.08□□□□□ -0.48
LMO4P61968 AC015909.3-201ENST00000572855 1794 ntBASIC12.07□□□□□ -0.48
LMO4P61968 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC12.07□□□□□ -0.48
LMO4P61968 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC12.07□□□□□ -0.48
LMO4P61968 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC12.07□□□□□ -0.48
LMO4P61968 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC12.07□□□□□ -0.48
LMO4P61968 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 TCAF2P1-201ENST00000291129 2421 ntBASIC12.07□□□□□ -0.48
LMO4P61968 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
LMO4P61968 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
LMO4P61968 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
LMO4P61968 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC12.07□□□□□ -0.48
LMO4P61968 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 OR2K2-202ENST00000374428 1038 ntBASIC12.07□□□□□ -0.48
LMO4P61968 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 AC026316.1-201ENST00000398900 414 ntBASIC12.07□□□□□ -0.48
LMO4P61968 FXNP2-201ENST00000411625 547 ntBASIC12.07□□□□□ -0.48
LMO4P61968 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC12.07□□□□□ -0.48
LMO4P61968 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 GAS5-209ENST00000430245 723 ntTSL 3 BASIC12.07□□□□□ -0.48
LMO4P61968 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
LMO4P61968 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC12.07□□□□□ -0.48
LMO4P61968 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC12.07□□□□□ -0.48
LMO4P61968 ST13P19-201ENST00000442505 1124 ntBASIC12.07□□□□□ -0.48
LMO4P61968 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 RN7SL67P-201ENST00000492147 296 ntBASIC12.07□□□□□ -0.48
LMO4P61968 AC019193.1-201ENST00000506678 823 ntBASIC12.07□□□□□ -0.48
LMO4P61968 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC12.07□□□□□ -0.48
LMO4P61968 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC12.07□□□□□ -0.48
LMO4P61968 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 PHBP15-201ENST00000574228 665 ntBASIC12.07□□□□□ -0.48
LMO4P61968 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 LINC01783-202ENST00000614408 828 ntBASIC12.07□□□□□ -0.48
LMO4P61968 BX284668.2-205ENST00000619677 828 ntBASIC12.07□□□□□ -0.48
LMO4P61968 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC12.07□□□□□ -0.48
LMO4P61968 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LMO4P61968 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms