Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 DGCR5-201ENST00000399539 862 ntBASIC15.76■□□□□ 0.11
LIG3P49916 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 TOMM22P5-201ENST00000416399 439 ntBASIC15.76■□□□□ 0.11
LIG3P49916 GSAP-205ENST00000430584 600 ntTSL 5 BASIC15.76■□□□□ 0.11
LIG3P49916 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC15.76■□□□□ 0.11
LIG3P49916 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 MYCLP2-201ENST00000449268 967 ntBASIC15.76■□□□□ 0.11
LIG3P49916 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC15.76■□□□□ 0.11
LIG3P49916 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC15.76■□□□□ 0.11
LIG3P49916 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.76■□□□□ 0.11
LIG3P49916 AC123567.1-201ENST00000548294 1261 ntBASIC15.76■□□□□ 0.11
LIG3P49916 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC15.76■□□□□ 0.11
LIG3P49916 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC15.76■□□□□ 0.11
LIG3P49916 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC15.76■□□□□ 0.11
LIG3P49916 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC15.76■□□□□ 0.11
LIG3P49916 AL158212.4-201ENST00000624062 1286 ntBASIC15.76■□□□□ 0.11
LIG3P49916 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.76■□□□□ 0.11
LIG3P49916 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.76■□□□□ 0.11
LIG3P49916 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.76■□□□□ 0.11
LIG3P49916 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC15.76■□□□□ 0.11
LIG3P49916 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
LIG3P49916 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC15.76■□□□□ 0.11
LIG3P49916 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.76■□□□□ 0.11
LIG3P49916 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.76■□□□□ 0.11
LIG3P49916 AC083964.2-201ENST00000623988 2396 ntBASIC15.76■□□□□ 0.11
LIG3P49916 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIG3P49916 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
LIG3P49916 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC15.76■□□□□ 0.11
LIG3P49916 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC15.76■□□□□ 0.11
LIG3P49916 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
LIG3P49916 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC15.75■□□□□ 0.11
LIG3P49916 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.75■□□□□ 0.11
LIG3P49916 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.75■□□□□ 0.11
LIG3P49916 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
LIG3P49916 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC15.75■□□□□ 0.11
LIG3P49916 METTL26-204ENST00000397665 558 ntTSL 2 BASIC15.75■□□□□ 0.11
LIG3P49916 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC15.75■□□□□ 0.11
LIG3P49916 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC15.75■□□□□ 0.11
LIG3P49916 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
LIG3P49916 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.75■□□□□ 0.11
LIG3P49916 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
LIG3P49916 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC15.75■□□□□ 0.11
LIG3P49916 RBM7-207ENST00000544582 692 ntTSL 3 BASIC15.75■□□□□ 0.11
LIG3P49916 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC15.75■□□□□ 0.11
LIG3P49916 RRP7BP-205ENST00000566851 833 ntBASIC15.75■□□□□ 0.11
LIG3P49916 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC15.75■□□□□ 0.11
LIG3P49916 AC093726.1-201ENST00000608064 963 ntBASIC15.75■□□□□ 0.11
LIG3P49916 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
LIG3P49916 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
LIG3P49916 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC15.75■□□□□ 0.11
LIG3P49916 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC15.75■□□□□ 0.11
LIG3P49916 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
LIG3P49916 AL118506.1-201ENST00000601296 3082 ntBASIC15.75■□□□□ 0.11
LIG3P49916 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
LIG3P49916 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC15.75■□□□□ 0.11
LIG3P49916 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.75■□□□□ 0.11
LIG3P49916 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.75■□□□□ 0.11
LIG3P49916 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIG3P49916 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
LIG3P49916 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
LIG3P49916 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
LIG3P49916 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC15.74■□□□□ 0.11
LIG3P49916 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LIG3P49916 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.74■□□□□ 0.11
LIG3P49916 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIG3P49916 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIG3P49916 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIG3P49916 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC15.74■□□□□ 0.11
LIG3P49916 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms