Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.66■□□□□ 0.1
LHX1P48742 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LHX1P48742 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LHX1P48742 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LHX1P48742 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
LHX1P48742 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LHX1P48742 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
LHX1P48742 CICP14-201ENST00000629111 2732 ntBASIC15.66■□□□□ 0.1
LHX1P48742 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
LHX1P48742 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LHX1P48742 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC15.66■□□□□ 0.1
LHX1P48742 EIF4HP1-201ENST00000453115 687 ntBASIC15.66■□□□□ 0.1
LHX1P48742 AC104073.2-201ENST00000453737 312 ntBASIC15.66■□□□□ 0.1
LHX1P48742 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC15.66■□□□□ 0.1
LHX1P48742 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC15.66■□□□□ 0.1
LHX1P48742 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC15.66■□□□□ 0.1
LHX1P48742 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC15.66■□□□□ 0.1
LHX1P48742 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC15.66■□□□□ 0.1
LHX1P48742 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC15.66■□□□□ 0.1
LHX1P48742 AC013355.1-201ENST00000562625 723 ntBASIC15.66■□□□□ 0.1
LHX1P48742 AC090164.2-201ENST00000611487 516 ntBASIC15.66■□□□□ 0.1
LHX1P48742 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC15.66■□□□□ 0.1
LHX1P48742 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC15.66■□□□□ 0.1
LHX1P48742 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.66■□□□□ 0.1
LHX1P48742 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
LHX1P48742 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.66■□□□□ 0.1
LHX1P48742 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
LHX1P48742 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.66■□□□□ 0.1
LHX1P48742 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC15.66■□□□□ 0.1
LHX1P48742 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LHX1P48742 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LHX1P48742 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.66■□□□□ 0.1
LHX1P48742 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.66■□□□□ 0.1
LHX1P48742 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
LHX1P48742 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LHX1P48742 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.66■□□□□ 0.1
LHX1P48742 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
LHX1P48742 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
LHX1P48742 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
LHX1P48742 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LHX1P48742 MX1-218ENST00000619682 1980 ntTSL 5 BASIC15.66■□□□□ 0.1
LHX1P48742 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
LHX1P48742 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
LHX1P48742 MIR600HG-201ENST00000449175 5984 ntBASIC15.65■□□□□ 0.1
LHX1P48742 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LHX1P48742 AC015688.4-201ENST00000580780 1647 ntBASIC15.65■□□□□ 0.1
LHX1P48742 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LHX1P48742 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.65■□□□□ 0.1
LHX1P48742 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
LHX1P48742 KRT8P28-201ENST00000433288 1390 ntBASIC15.65■□□□□ 0.1
LHX1P48742 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC15.65■□□□□ 0.1
LHX1P48742 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LHX1P48742 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
LHX1P48742 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
LHX1P48742 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LHX1P48742 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC15.65■□□□□ 0.1
LHX1P48742 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LHX1P48742 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
LHX1P48742 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
LHX1P48742 NPPA-201ENST00000376476 728 ntTSL 3 BASIC15.65■□□□□ 0.1
LHX1P48742 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LHX1P48742 AL008707.1-201ENST00000422498 534 ntBASIC15.65■□□□□ 0.1
LHX1P48742 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LHX1P48742 CALR4P-201ENST00000431943 946 ntBASIC15.65■□□□□ 0.1
LHX1P48742 AL645933.1-201ENST00000440087 609 ntBASIC15.65■□□□□ 0.1
LHX1P48742 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LHX1P48742 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC15.65■□□□□ 0.1
LHX1P48742 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC15.65■□□□□ 0.1
LHX1P48742 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LHX1P48742 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC15.65■□□□□ 0.1
LHX1P48742 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC15.65■□□□□ 0.1
LHX1P48742 SYT17-208ENST00000568433 812 ntTSL 3 BASIC15.65■□□□□ 0.1
LHX1P48742 AC005962.1-201ENST00000584100 773 ntBASIC15.65■□□□□ 0.1
LHX1P48742 AC008805.1-201ENST00000590892 364 ntBASIC15.65■□□□□ 0.1
LHX1P48742 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC15.65■□□□□ 0.1
LHX1P48742 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC15.65■□□□□ 0.1
LHX1P48742 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
LHX1P48742 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
LHX1P48742 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LHX1P48742 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
LHX1P48742 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.65■□□□□ 0.1
LHX1P48742 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC15.65■□□□□ 0.1
LHX1P48742 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LHX1P48742 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
LHX1P48742 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
LHX1P48742 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LHX1P48742 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LHX1P48742 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.65■□□□□ 0.1
LHX1P48742 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
LHX1P48742 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.65■□□□□ 0.1
LHX1P48742 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC15.65■□□□□ 0.1
LHX1P48742 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC15.65■□□□□ 0.1
LHX1P48742 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
LHX1P48742 KHSRPP1-201ENST00000427983 1768 ntBASIC15.64■□□□□ 0.1
LHX1P48742 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LHX1P48742 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LHX1P48742 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
LHX1P48742 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC15.64■□□□□ 0.09
LHX1P48742 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LHX1P48742 AL133338.1-201ENST00000565695 1517 ntBASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms