Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL12P48061 KRT8P28-201ENST00000433288 1390 ntBASIC14.59□□□□□ -0.07
CXCL12P48061 API5-208ENST00000531273 1868 ntTSL 2 BASIC14.59□□□□□ -0.07
CXCL12P48061 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL12P48061 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CXCL12P48061 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CXCL12P48061 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CXCL12P48061 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CXCL12P48061 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CXCL12P48061 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CXCL12P48061 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
CXCL12P48061 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
CXCL12P48061 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CXCL12P48061 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CXCL12P48061 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL12P48061 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.58□□□□□ -0.08
CXCL12P48061 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.58□□□□□ -0.08
CXCL12P48061 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL12P48061 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL12P48061 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
CXCL12P48061 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC14.58□□□□□ -0.08
CXCL12P48061 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL12P48061 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL12P48061 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
CXCL12P48061 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
CXCL12P48061 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL12P48061 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
CXCL12P48061 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC14.58□□□□□ -0.08
CXCL12P48061 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC14.58□□□□□ -0.08
CXCL12P48061 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL12P48061 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL12P48061 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC14.58□□□□□ -0.08
CXCL12P48061 RN7SL277P-201ENST00000481521 288 ntBASIC14.58□□□□□ -0.08
CXCL12P48061 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC14.58□□□□□ -0.08
CXCL12P48061 IGHVIII-5-2-201ENST00000522505 261 ntBASIC14.58□□□□□ -0.08
CXCL12P48061 OR5BD1P-201ENST00000532527 817 ntBASIC14.58□□□□□ -0.08
CXCL12P48061 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC14.58□□□□□ -0.08
CXCL12P48061 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC14.58□□□□□ -0.08
CXCL12P48061 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC14.58□□□□□ -0.08
CXCL12P48061 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL12P48061 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC14.58□□□□□ -0.08
CXCL12P48061 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.58□□□□□ -0.08
CXCL12P48061 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
CXCL12P48061 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.58□□□□□ -0.08
CXCL12P48061 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL12P48061 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.58□□□□□ -0.08
CXCL12P48061 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL12P48061 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC14.58□□□□□ -0.08
CXCL12P48061 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC14.58□□□□□ -0.08
CXCL12P48061 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL12P48061 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
CXCL12P48061 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL12P48061 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL12P48061 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL12P48061 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CXCL12P48061 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.57□□□□□ -0.08
CXCL12P48061 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL12P48061 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL12P48061 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL12P48061 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL12P48061 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL12P48061 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC14.57□□□□□ -0.08
CXCL12P48061 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL12P48061 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL12P48061 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL12P48061 AC021305.1-201ENST00000520656 1514 ntBASIC14.57□□□□□ -0.08
CXCL12P48061 AC087481.3-201ENST00000602886 1894 ntBASIC14.57□□□□□ -0.08
CXCL12P48061 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.57□□□□□ -0.08
CXCL12P48061 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL12P48061 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL12P48061 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL12P48061 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC14.57□□□□□ -0.08
CXCL12P48061 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL12P48061 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL12P48061 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL12P48061 AC018638.5-201ENST00000450885 754 ntBASIC14.57□□□□□ -0.08
CXCL12P48061 AC012158.2-201ENST00000536546 354 ntBASIC14.57□□□□□ -0.08
CXCL12P48061 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC14.57□□□□□ -0.08
CXCL12P48061 AC007952.4-201ENST00000573866 637 ntBASIC14.57□□□□□ -0.08
CXCL12P48061 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC14.57□□□□□ -0.08
CXCL12P48061 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
CXCL12P48061 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC14.57□□□□□ -0.08
CXCL12P48061 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.57□□□□□ -0.08
CXCL12P48061 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC14.57□□□□□ -0.08
CXCL12P48061 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL12P48061 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL12P48061 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.57□□□□□ -0.08
CXCL12P48061 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CXCL12P48061 WASH3P-207ENST00000560956 1394 ntBASIC14.57□□□□□ -0.08
CXCL12P48061 FTX-216ENST00000638985 1367 ntTSL 5 BASIC14.57□□□□□ -0.08
CXCL12P48061 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC14.57□□□□□ -0.08
CXCL12P48061 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
CXCL12P48061 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.56□□□□□ -0.08
CXCL12P48061 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CXCL12P48061 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC14.56□□□□□ -0.08
CXCL12P48061 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CXCL12P48061 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CXCL12P48061 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CXCL12P48061 AL590440.2-201ENST00000641973 1595 ntBASIC14.56□□□□□ -0.08
CXCL12P48061 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms