Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.49□□□□□ -0.09
HNF4AP41235 PPP1R26P4-201ENST00000619065 3527 ntBASIC14.49□□□□□ -0.09
HNF4AP41235 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
HNF4AP41235 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.49□□□□□ -0.09
HNF4AP41235 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.49□□□□□ -0.09
HNF4AP41235 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC14.49□□□□□ -0.09
HNF4AP41235 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.49□□□□□ -0.09
HNF4AP41235 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
HNF4AP41235 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.49□□□□□ -0.09
HNF4AP41235 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
HNF4AP41235 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.49□□□□□ -0.09
HNF4AP41235 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
HNF4AP41235 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HNF4AP41235 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
HNF4AP41235 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
HNF4AP41235 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
HNF4AP41235 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
HNF4AP41235 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.48□□□□□ -0.09
HNF4AP41235 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.48□□□□□ -0.09
HNF4AP41235 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC14.48□□□□□ -0.09
HNF4AP41235 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
HNF4AP41235 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.48□□□□□ -0.09
HNF4AP41235 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
HNF4AP41235 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 COPE-202ENST00000349893 948 ntTSL 2 BASIC14.48□□□□□ -0.09
HNF4AP41235 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC14.48□□□□□ -0.09
HNF4AP41235 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.48□□□□□ -0.09
HNF4AP41235 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.48□□□□□ -0.09
HNF4AP41235 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 AC007969.1-201ENST00000433675 447 ntBASIC14.48□□□□□ -0.09
HNF4AP41235 BCRP2-202ENST00000447763 634 ntBASIC14.48□□□□□ -0.09
HNF4AP41235 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 BCRP6-201ENST00000510112 632 ntBASIC14.48□□□□□ -0.09
HNF4AP41235 BCRP7-201ENST00000511549 544 ntBASIC14.48□□□□□ -0.09
HNF4AP41235 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
HNF4AP41235 AC068587.3-201ENST00000526613 355 ntBASIC14.48□□□□□ -0.09
HNF4AP41235 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.48□□□□□ -0.09
HNF4AP41235 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC14.48□□□□□ -0.09
HNF4AP41235 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
HNF4AP41235 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
HNF4AP41235 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.48□□□□□ -0.09
HNF4AP41235 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HNF4AP41235 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC14.48□□□□□ -0.09
HNF4AP41235 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
HNF4AP41235 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC14.47□□□□□ -0.09
HNF4AP41235 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
HNF4AP41235 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
HNF4AP41235 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
HNF4AP41235 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
HNF4AP41235 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
HNF4AP41235 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
HNF4AP41235 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 AC005034.1-201ENST00000426657 489 ntBASIC14.47□□□□□ -0.09
HNF4AP41235 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
HNF4AP41235 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.47□□□□□ -0.09
HNF4AP41235 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.47□□□□□ -0.09
HNF4AP41235 SLC25A47P1-201ENST00000531577 414 ntBASIC14.47□□□□□ -0.09
HNF4AP41235 RBM7-207ENST00000544582 692 ntTSL 3 BASIC14.47□□□□□ -0.09
HNF4AP41235 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms