Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
MSX2P35548 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
MSX2P35548 CROT-203ENST00000419147 2959 ntTSL 2 BASIC14.25□□□□□ -0.13
MSX2P35548 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC14.25□□□□□ -0.13
MSX2P35548 KRT18P32-201ENST00000424695 1287 ntBASIC14.25□□□□□ -0.13
MSX2P35548 AL591424.1-201ENST00000442569 1213 ntBASIC14.25□□□□□ -0.13
MSX2P35548 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC14.25□□□□□ -0.13
MSX2P35548 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC14.25□□□□□ -0.13
MSX2P35548 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX2P35548 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC14.25□□□□□ -0.13
MSX2P35548 AC074044.1-201ENST00000609673 707 ntBASIC14.25□□□□□ -0.13
MSX2P35548 AC007967.4-201ENST00000614700 386 ntBASIC14.25□□□□□ -0.13
MSX2P35548 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
MSX2P35548 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
MSX2P35548 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
MSX2P35548 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
MSX2P35548 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC14.25□□□□□ -0.13
MSX2P35548 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
MSX2P35548 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
MSX2P35548 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX2P35548 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX2P35548 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX2P35548 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.25□□□□□ -0.13
MSX2P35548 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX2P35548 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC14.25□□□□□ -0.13
MSX2P35548 AC073548.1-201ENST00000624088 1882 ntBASIC14.25□□□□□ -0.13
MSX2P35548 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX2P35548 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
MSX2P35548 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
MSX2P35548 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC14.24□□□□□ -0.13
MSX2P35548 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC14.24□□□□□ -0.13
MSX2P35548 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
MSX2P35548 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 DKFZP434A062-201ENST00000573103 5021 ntBASIC14.24□□□□□ -0.13
MSX2P35548 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
MSX2P35548 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 AC015909.5-201ENST00000624336 2266 ntBASIC14.24□□□□□ -0.13
MSX2P35548 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
MSX2P35548 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
MSX2P35548 TOMM22P5-201ENST00000416399 439 ntBASIC14.24□□□□□ -0.13
MSX2P35548 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC14.24□□□□□ -0.13
MSX2P35548 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.24□□□□□ -0.13
MSX2P35548 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.24□□□□□ -0.13
MSX2P35548 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.24□□□□□ -0.13
MSX2P35548 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.24□□□□□ -0.13
MSX2P35548 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC14.24□□□□□ -0.13
MSX2P35548 MIR4453-201ENST00000584019 89 ntBASIC14.24□□□□□ -0.13
MSX2P35548 PIN1-206ENST00000587625 878 ntTSL 2 BASIC14.24□□□□□ -0.13
MSX2P35548 AL033527.5-202ENST00000641632 1098 ntBASIC14.24□□□□□ -0.13
MSX2P35548 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
MSX2P35548 AC114271.1-201ENST00000612689 2813 ntBASIC14.24□□□□□ -0.13
MSX2P35548 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC14.24□□□□□ -0.13
MSX2P35548 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.24□□□□□ -0.13
MSX2P35548 AL139385.1-201ENST00000611744 3272 ntBASIC14.24□□□□□ -0.13
MSX2P35548 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
MSX2P35548 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
MSX2P35548 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MSX2P35548 AL157996.1-201ENST00000624684 2299 ntBASIC14.24□□□□□ -0.13
MSX2P35548 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
MSX2P35548 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.23□□□□□ -0.13
MSX2P35548 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC14.23□□□□□ -0.13
MSX2P35548 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
MSX2P35548 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
MSX2P35548 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
MSX2P35548 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC14.23□□□□□ -0.13
MSX2P35548 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
MSX2P35548 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 CD82-202ENST00000342935 967 ntTSL 5 BASIC14.23□□□□□ -0.13
MSX2P35548 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX2P35548 AL590627.1-203ENST00000421194 1026 ntBASIC14.23□□□□□ -0.13
MSX2P35548 HLA-K-203ENST00000430151 1046 ntBASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms