Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.16□□□□□ -0.14
SDC1P18827 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.16□□□□□ -0.14
SDC1P18827 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC14.16□□□□□ -0.14
SDC1P18827 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
SDC1P18827 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 AC215219.1-201ENST00000400706 1817 ntBASIC14.16□□□□□ -0.14
SDC1P18827 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
SDC1P18827 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
SDC1P18827 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.16□□□□□ -0.14
SDC1P18827 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC14.16□□□□□ -0.14
SDC1P18827 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.16□□□□□ -0.14
SDC1P18827 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.16□□□□□ -0.14
SDC1P18827 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.16□□□□□ -0.14
SDC1P18827 AC002472.2-201ENST00000442739 958 ntBASIC14.16□□□□□ -0.14
SDC1P18827 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC14.16□□□□□ -0.14
SDC1P18827 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC14.16□□□□□ -0.14
SDC1P18827 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
SDC1P18827 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
SDC1P18827 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
SDC1P18827 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC14.16□□□□□ -0.14
SDC1P18827 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.16□□□□□ -0.14
SDC1P18827 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.16□□□□□ -0.14
SDC1P18827 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.16□□□□□ -0.14
SDC1P18827 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.16□□□□□ -0.14
SDC1P18827 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.16□□□□□ -0.14
SDC1P18827 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
SDC1P18827 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 AC010327.5-201ENST00000586923 3061 ntBASIC14.16□□□□□ -0.14
SDC1P18827 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.16□□□□□ -0.14
SDC1P18827 AC020910.6-201ENST00000623084 1459 ntBASIC14.16□□□□□ -0.14
SDC1P18827 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC14.16□□□□□ -0.14
SDC1P18827 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
SDC1P18827 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
SDC1P18827 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.16□□□□□ -0.14
SDC1P18827 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC14.16□□□□□ -0.14
SDC1P18827 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
SDC1P18827 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
SDC1P18827 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC14.16□□□□□ -0.14
SDC1P18827 AC104581.4-201ENST00000623126 3052 ntBASIC14.16□□□□□ -0.14
SDC1P18827 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC14.16□□□□□ -0.14
SDC1P18827 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDC1P18827 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SDC1P18827 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC14.15□□□□□ -0.14
SDC1P18827 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SDC1P18827 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
SDC1P18827 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SDC1P18827 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC14.15□□□□□ -0.14
SDC1P18827 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SDC1P18827 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDC1P18827 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDC1P18827 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC14.15□□□□□ -0.14
SDC1P18827 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDC1P18827 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDC1P18827 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDC1P18827 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDC1P18827 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
SDC1P18827 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SDC1P18827 AC020910.5-201ENST00000623668 1865 ntBASIC14.15□□□□□ -0.14
SDC1P18827 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SDC1P18827 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.15□□□□□ -0.14
SDC1P18827 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC14.15□□□□□ -0.14
SDC1P18827 GOLGA6L11P-201ENST00000417252 1298 ntBASIC14.15□□□□□ -0.14
SDC1P18827 POM121L8P-201ENST00000417732 1281 ntBASIC14.15□□□□□ -0.14
SDC1P18827 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.15□□□□□ -0.14
SDC1P18827 AC245100.3-201ENST00000441281 285 ntBASIC14.15□□□□□ -0.14
SDC1P18827 POM121L9P-203ENST00000441984 1285 ntBASIC14.15□□□□□ -0.14
SDC1P18827 AC190387.1-201ENST00000551683 408 ntBASIC14.15□□□□□ -0.14
SDC1P18827 AL096865.1-201ENST00000606796 927 ntBASIC14.15□□□□□ -0.14
SDC1P18827 AL033527.5-201ENST00000641382 801 ntBASIC14.15□□□□□ -0.14
SDC1P18827 CICP16-201ENST00000502609 2813 ntBASIC14.15□□□□□ -0.14
SDC1P18827 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SDC1P18827 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
SDC1P18827 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC14.15□□□□□ -0.14
SDC1P18827 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SDC1P18827 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDC1P18827 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.15□□□□□ -0.14
SDC1P18827 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDC1P18827 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDC1P18827 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDC1P18827 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms