Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HLA-DQB2P05538 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HLA-DQB2P05538 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.05■□□□□ 0
HLA-DQB2P05538 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
HLA-DQB2P05538 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HLA-DQB2P05538 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HLA-DQB2P05538 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
HLA-DQB2P05538 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.05■□□□□ -0
HLA-DQB2P05538 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQB2P05538 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQB2P05538 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQB2P05538 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQB2P05538 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQB2P05538 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQB2P05538 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQB2P05538 AL136309.1-201ENST00000403917 691 ntBASIC15.05■□□□□ -0
HLA-DQB2P05538 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQB2P05538 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC15.05■□□□□ -0
HLA-DQB2P05538 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
HLA-DQB2P05538 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC15.05■□□□□ -0
HLA-DQB2P05538 PUDPP3-201ENST00000445368 636 ntBASIC15.05■□□□□ -0
HLA-DQB2P05538 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC15.05■□□□□ -0
HLA-DQB2P05538 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC15.05■□□□□ -0
HLA-DQB2P05538 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC15.05■□□□□ -0
HLA-DQB2P05538 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC15.05■□□□□ -0
HLA-DQB2P05538 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQB2P05538 AC103988.2-201ENST00000561804 725 ntBASIC15.05■□□□□ -0
HLA-DQB2P05538 HNRNPA1P48-202ENST00000565308 961 ntBASIC15.05■□□□□ -0
HLA-DQB2P05538 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC15.05■□□□□ -0
HLA-DQB2P05538 AL358472.3-201ENST00000608147 415 ntBASIC15.05■□□□□ -0
HLA-DQB2P05538 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQB2P05538 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC15.05■□□□□ -0
HLA-DQB2P05538 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC15.05■□□□□ -0
HLA-DQB2P05538 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC15.05■□□□□ -0
HLA-DQB2P05538 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQB2P05538 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC15.05■□□□□ -0
HLA-DQB2P05538 AL590440.2-201ENST00000641973 1595 ntBASIC15.05■□□□□ -0
HLA-DQB2P05538 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQB2P05538 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC15.05■□□□□ -0
HLA-DQB2P05538 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQB2P05538 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
HLA-DQB2P05538 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQB2P05538 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQB2P05538 MYADML-201ENST00000474610 2147 ntBASIC15.05■□□□□ -0
HLA-DQB2P05538 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQB2P05538 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQB2P05538 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQB2P05538 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQB2P05538 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DQB2P05538 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQB2P05538 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
HLA-DQB2P05538 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQB2P05538 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
HLA-DQB2P05538 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQB2P05538 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC15.04■□□□□ -0
HLA-DQB2P05538 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
HLA-DQB2P05538 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
HLA-DQB2P05538 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQB2P05538 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQB2P05538 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC15.04■□□□□ -0
HLA-DQB2P05538 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQB2P05538 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC15.04■□□□□ -0
HLA-DQB2P05538 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC15.04■□□□□ -0
HLA-DQB2P05538 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQB2P05538 AC099336.1-201ENST00000417053 1171 ntBASIC15.04■□□□□ -0
HLA-DQB2P05538 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC15.04■□□□□ -0
HLA-DQB2P05538 AC022210.1-201ENST00000449856 793 ntBASIC15.04■□□□□ -0
HLA-DQB2P05538 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQB2P05538 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC15.04■□□□□ -0
HLA-DQB2P05538 ZACNP1-201ENST00000612259 710 ntBASIC15.04■□□□□ -0
HLA-DQB2P05538 AC008687.7-202ENST00000637404 953 ntBASIC15.04■□□□□ -0
HLA-DQB2P05538 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQB2P05538 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQB2P05538 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DQB2P05538 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.04■□□□□ -0
HLA-DQB2P05538 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.04■□□□□ -0
HLA-DQB2P05538 AC139712.1-201ENST00000378256 1875 ntBASIC15.03■□□□□ -0
HLA-DQB2P05538 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.03■□□□□ -0
HLA-DQB2P05538 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
HLA-DQB2P05538 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HLA-DQB2P05538 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
HLA-DQB2P05538 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HLA-DQB2P05538 F10-203ENST00000409306 1450 ntTSL 3 BASIC15.03■□□□□ -0
HLA-DQB2P05538 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HLA-DQB2P05538 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC15.03■□□□□ -0
HLA-DQB2P05538 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HLA-DQB2P05538 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.03■□□□□ -0
HLA-DQB2P05538 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC15.03■□□□□ -0
HLA-DQB2P05538 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
HLA-DQB2P05538 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC15.03■□□□□ -0
HLA-DQB2P05538 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
HLA-DQB2P05538 TPO-206ENST00000382269 1155 ntTSL 5 BASIC15.03■□□□□ -0
HLA-DQB2P05538 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
HLA-DQB2P05538 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC15.03■□□□□ -0
HLA-DQB2P05538 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC15.03■□□□□ -0
HLA-DQB2P05538 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC15.03■□□□□ -0
HLA-DQB2P05538 CHMP1AP1-201ENST00000445563 662 ntBASIC15.03■□□□□ -0
HLA-DQB2P05538 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC15.03■□□□□ -0
HLA-DQB2P05538 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC15.03■□□□□ -0
HLA-DQB2P05538 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms