Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHOX2O60902 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHOX2O60902 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC14.88□□□□□ -0.03
SHOX2O60902 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHOX2O60902 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHOX2O60902 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHOX2O60902 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHOX2O60902 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHOX2O60902 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SHOX2O60902 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC14.88□□□□□ -0.03
SHOX2O60902 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
SHOX2O60902 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
SHOX2O60902 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC14.88□□□□□ -0.03
SHOX2O60902 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHOX2O60902 CBR1-202ENST00000399191 838 ntTSL 3 BASIC14.88□□□□□ -0.03
SHOX2O60902 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC14.88□□□□□ -0.03
SHOX2O60902 PPIE-208ENST00000470213 927 ntTSL 3 BASIC14.88□□□□□ -0.03
SHOX2O60902 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SHOX2O60902 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC14.88□□□□□ -0.03
SHOX2O60902 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC14.88□□□□□ -0.03
SHOX2O60902 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.88□□□□□ -0.03
SHOX2O60902 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC14.88□□□□□ -0.03
SHOX2O60902 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHOX2O60902 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHOX2O60902 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC14.88□□□□□ -0.03
SHOX2O60902 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHOX2O60902 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC14.88□□□□□ -0.03
SHOX2O60902 AC007064.4-201ENST00000637740 555 ntBASIC14.88□□□□□ -0.03
SHOX2O60902 NSF-201ENST00000398238 3983 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHOX2O60902 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC14.88□□□□□ -0.03
SHOX2O60902 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.88□□□□□ -0.03
SHOX2O60902 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC14.88□□□□□ -0.03
SHOX2O60902 IKBKB-218ENST00000520835 2403 ntTSL 2 BASIC14.88□□□□□ -0.03
SHOX2O60902 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHOX2O60902 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHOX2O60902 OFD1-201ENST00000340096 3611 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHOX2O60902 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
SHOX2O60902 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC14.88□□□□□ -0.03
SHOX2O60902 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHOX2O60902 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
SHOX2O60902 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
SHOX2O60902 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SHOX2O60902 BCL2L1-202ENST00000376055 2383 ntTSL 2 BASIC14.88□□□□□ -0.03
SHOX2O60902 ANXA11-201ENST00000265447 2526 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
SHOX2O60902 AC012531.1-201ENST00000562848 2680 ntBASIC14.88□□□□□ -0.03
SHOX2O60902 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC14.88□□□□□ -0.03
SHOX2O60902 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
SHOX2O60902 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHOX2O60902 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 BAIAP2-202ENST00000321300 2879 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 NPTN-IT1-201ENST00000628401 2283 ntBASIC14.87□□□□□ -0.03
SHOX2O60902 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
SHOX2O60902 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC14.87□□□□□ -0.03
SHOX2O60902 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 POLDIP3-209ENST00000617178 2006 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 SLC4A2-201ENST00000392826 3947 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
SHOX2O60902 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
SHOX2O60902 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC14.87□□□□□ -0.03
SHOX2O60902 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC14.87□□□□□ -0.03
SHOX2O60902 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
SHOX2O60902 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC14.87□□□□□ -0.03
SHOX2O60902 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC14.87□□□□□ -0.03
SHOX2O60902 AC093909.1-201ENST00000504731 1122 ntBASIC14.87□□□□□ -0.03
SHOX2O60902 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC14.87□□□□□ -0.03
SHOX2O60902 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC14.87□□□□□ -0.03
SHOX2O60902 AP001005.1-201ENST00000571755 1248 ntBASIC14.87□□□□□ -0.03
SHOX2O60902 KRT18P8-201ENST00000581937 1246 ntBASIC14.87□□□□□ -0.03
SHOX2O60902 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 AC008267.7-201ENST00000624570 1194 ntBASIC14.87□□□□□ -0.03
SHOX2O60902 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
SHOX2O60902 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
SHOX2O60902 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 KLF7-204ENST00000423015 1788 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 KCNMA1-285ENST00000640605 3864 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
SHOX2O60902 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
SHOX2O60902 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 AL445250.1-201ENST00000641671 2259 ntBASIC14.87□□□□□ -0.03
SHOX2O60902 PDZRN3-208ENST00000479530 2778 ntTSL 2 BASIC14.87□□□□□ -0.03
SHOX2O60902 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC14.87□□□□□ -0.03
SHOX2O60902 ELP4-203ENST00000395934 1961 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SHOX2O60902 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC14.87□□□□□ -0.03
SHOX2O60902 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC14.87□□□□□ -0.03
SHOX2O60902 CARS-AS1-201ENST00000499962 2664 ntTSL 2 BASIC14.87□□□□□ -0.03
SHOX2O60902 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC14.87□□□□□ -0.03
SHOX2O60902 KLC2-206ENST00000417856 3015 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms