Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HMGB3O15347 CYFIP1-207ENST00000617556 5674 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HMGB3O15347 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC12.03□□□□□ -0.48
HMGB3O15347 USP4-203ENST00000415188 1454 ntTSL 3 BASIC12.03□□□□□ -0.48
HMGB3O15347 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
HMGB3O15347 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
HMGB3O15347 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
HMGB3O15347 DNM3-208ENST00000627582 7625 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HMGB3O15347 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC12.03□□□□□ -0.48
HMGB3O15347 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
HMGB3O15347 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HMGB3O15347 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HMGB3O15347 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HMGB3O15347 AC136604.1-201ENST00000418535 575 ntBASIC12.03□□□□□ -0.48
HMGB3O15347 EEF1DP4-201ENST00000446006 880 ntBASIC12.03□□□□□ -0.48
HMGB3O15347 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC12.03□□□□□ -0.48
HMGB3O15347 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC12.03□□□□□ -0.48
HMGB3O15347 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC12.03□□□□□ -0.48
HMGB3O15347 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC12.03□□□□□ -0.48
HMGB3O15347 RMI2-205ENST00000576027 818 ntTSL 2 BASIC12.03□□□□□ -0.48
HMGB3O15347 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC12.03□□□□□ -0.48
HMGB3O15347 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HMGB3O15347 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC12.03□□□□□ -0.48
HMGB3O15347 OR4D9-203ENST00000641962 6123 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
HMGB3O15347 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC12.03□□□□□ -0.48
HMGB3O15347 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
HMGB3O15347 CASP8AP2-205ENST00000551025 6151 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HMGB3O15347 JADE1-213ENST00000610919 5644 ntAPPRIS P3 TSL 5 BASIC12.03□□□□□ -0.48
HMGB3O15347 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HMGB3O15347 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HMGB3O15347 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HMGB3O15347 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HMGB3O15347 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HMGB3O15347 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC12.03□□□□□ -0.48
HMGB3O15347 AP2A2-202ENST00000448903 4575 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
HMGB3O15347 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC12.03□□□□□ -0.48
HMGB3O15347 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HMGB3O15347 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
HMGB3O15347 VCL-202ENST00000372755 6489 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HMGB3O15347 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC12.03□□□□□ -0.48
HMGB3O15347 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC12.03□□□□□ -0.48
HMGB3O15347 RTL5-202ENST00000609883 4105 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
HMGB3O15347 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC12.03□□□□□ -0.48
HMGB3O15347 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
HMGB3O15347 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC12.03□□□□□ -0.48
HMGB3O15347 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HMGB3O15347 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC12.03□□□□□ -0.48
HMGB3O15347 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC12.02□□□□□ -0.48
HMGB3O15347 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
HMGB3O15347 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC12.02□□□□□ -0.48
HMGB3O15347 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
HMGB3O15347 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
HMGB3O15347 PLEKHA6-202ENST00000414478 5091 ntTSL 5 BASIC12.02□□□□□ -0.48
HMGB3O15347 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
HMGB3O15347 TUB-202ENST00000305253 6420 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
HMGB3O15347 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC12.02□□□□□ -0.48
HMGB3O15347 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.48
HMGB3O15347 PPP1R10-201ENST00000376511 4525 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
HMGB3O15347 MYT1L-204ENST00000428368 4850 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
HMGB3O15347 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
HMGB3O15347 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC12.02□□□□□ -0.48
HMGB3O15347 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC12.02□□□□□ -0.49
HMGB3O15347 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC12.02□□□□□ -0.49
HMGB3O15347 AL122018.1-201ENST00000446607 2310 ntBASIC12.02□□□□□ -0.49
HMGB3O15347 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC12.02□□□□□ -0.49
HMGB3O15347 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 WWP2-202ENST00000359154 4515 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC12.02□□□□□ -0.49
HMGB3O15347 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC12.02□□□□□ -0.49
HMGB3O15347 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.49
HMGB3O15347 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.49
HMGB3O15347 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC12.02□□□□□ -0.49
HMGB3O15347 AC009947.1-201ENST00000444350 727 ntBASIC12.02□□□□□ -0.49
HMGB3O15347 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC12.02□□□□□ -0.49
HMGB3O15347 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC12.02□□□□□ -0.49
HMGB3O15347 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
HMGB3O15347 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC12.02□□□□□ -0.49
HMGB3O15347 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.49
HMGB3O15347 SPIB-207ENST00000597855 564 ntTSL 4 BASIC12.02□□□□□ -0.49
HMGB3O15347 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 AC004877.2-201ENST00000623941 599 ntBASIC12.02□□□□□ -0.49
HMGB3O15347 SERF2-217ENST00000630046 862 ntTSL 5 BASIC12.02□□□□□ -0.49
HMGB3O15347 FAM215A-202ENST00000632077 792 ntBASIC12.02□□□□□ -0.49
HMGB3O15347 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC12.02□□□□□ -0.49
HMGB3O15347 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC12.02□□□□□ -0.49
HMGB3O15347 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC12.02□□□□□ -0.49
HMGB3O15347 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 OTOF-203ENST00000339598 4756 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 VAMP4-201ENST00000236192 5159 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
HMGB3O15347 DHX8-201ENST00000262415 5558 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms