Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 OARD1-204ENST00000464633 717 ntTSL 2 BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 RN7SL163P-201ENST00000583100 276 ntBASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 AL136295.7-201ENST00000619226 1200 ntBASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
SSX2IPQ9Y2D8 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 DEF8-202ENST00000418391 852 ntTSL 2 BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 GHSR-202ENST00000427970 912 ntBASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 FAM58BP-201ENST00000439056 645 ntBASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 Z97180.1-201ENST00000445173 988 ntBASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 SYT17-208ENST00000568433 812 ntTSL 3 BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 HCG18-245ENST00000602550 559 ntTSL 4 BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 AC091544.8-201ENST00000619490 361 ntBASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 RETN-203ENST00000629642 400 ntTSL 5 BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
SSX2IPQ9Y2D8 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC16.02■□□□□ 0.16
SSX2IPQ9Y2D8 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SSX2IPQ9Y2D8 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SSX2IPQ9Y2D8 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SSX2IPQ9Y2D8 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC16.02■□□□□ 0.16
SSX2IPQ9Y2D8 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
SSX2IPQ9Y2D8 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.16
SSX2IPQ9Y2D8 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SSX2IPQ9Y2D8 TUBBP5-203ENST00000508529 1334 ntBASIC16.02■□□□□ 0.16
SSX2IPQ9Y2D8 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.02■□□□□ 0.16
SSX2IPQ9Y2D8 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
SSX2IPQ9Y2D8 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC16.02■□□□□ 0.16
SSX2IPQ9Y2D8 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SSX2IPQ9Y2D8 CYP46A4P-201ENST00000414953 267 ntBASIC16.02■□□□□ 0.16
SSX2IPQ9Y2D8 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC16.02■□□□□ 0.16
SSX2IPQ9Y2D8 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC16.02■□□□□ 0.16
SSX2IPQ9Y2D8 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC16.02■□□□□ 0.16
SSX2IPQ9Y2D8 AC005730.2-201ENST00000564549 1184 ntBASIC16.02■□□□□ 0.16
SSX2IPQ9Y2D8 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC16.02■□□□□ 0.16
SSX2IPQ9Y2D8 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC16.02■□□□□ 0.16
SSX2IPQ9Y2D8 AC091812.3-201ENST00000621362 345 ntBASIC16.02■□□□□ 0.16
SSX2IPQ9Y2D8 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SSX2IPQ9Y2D8 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
SSX2IPQ9Y2D8 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
SSX2IPQ9Y2D8 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
SSX2IPQ9Y2D8 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SSX2IPQ9Y2D8 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
SSX2IPQ9Y2D8 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
SSX2IPQ9Y2D8 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
SSX2IPQ9Y2D8 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SSX2IPQ9Y2D8 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SSX2IPQ9Y2D8 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
SSX2IPQ9Y2D8 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC16.02■□□□□ 0.15
SSX2IPQ9Y2D8 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.15
SSX2IPQ9Y2D8 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
SSX2IPQ9Y2D8 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.15
SSX2IPQ9Y2D8 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SSX2IPQ9Y2D8 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SSX2IPQ9Y2D8 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SSX2IPQ9Y2D8 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms