Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC005562.1-201ENST00000583030 3219 ntBASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 MIR770-201ENST00000390219 98 ntBASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 RN7SL399P-201ENST00000471648 279 ntBASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 RRP7BP-205ENST00000566851 833 ntBASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 AC023090.2-201ENST00000625182 2110 ntBASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC39Q9UFE4 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 RPL13AP25-201ENST00000484130 612 ntBASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 AC093004.1-201ENST00000508850 424 ntBASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 AC027796.2-201ENST00000575326 344 ntBASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 AC004790.1-201ENST00000612686 536 ntBASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 AC009118.2-201ENST00000613275 655 ntBASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms