Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 RDX-218ENST00000544551 4117 ntTSL 2 BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 GZMB-202ENST00000382540 816 ntTSL 5 BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 MIR1909-201ENST00000411312 80 ntBASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 AC004945.1-201ENST00000416738 983 ntBASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 KLF2P4-201ENST00000451959 1225 ntBASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 COX5BP1-201ENST00000507622 393 ntBASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 VPS18-202ENST00000558474 873 ntTSL 3 BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SMC4Q9NTJ3 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 SNX18-202ENST00000343017 3140 ntBASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 AC026954.1-201ENST00000429771 1293 ntBASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 TPT1P11-201ENST00000458482 498 ntBASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 ACA64.2-201ENST00000459014 129 ntBASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMC4Q9NTJ3 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 AHCYP2-201ENST00000430630 1300 ntBASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 PFN2-215ENST00000497148 743 ntTSL 4 BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 RN7SL713P-201ENST00000582127 302 ntBASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms