Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 KLF2P2-201ENST00000416807 1039 ntBASIC15.39■□□□□ 0.05
PCDH9Q9HC56 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 NME2P1-201ENST00000426182 414 ntBASIC15.39■□□□□ 0.05
PCDH9Q9HC56 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 TDH-203ENST00000531764 1110 ntBASIC15.39■□□□□ 0.05
PCDH9Q9HC56 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 AC005225.4-201ENST00000557330 545 ntBASIC15.39■□□□□ 0.05
PCDH9Q9HC56 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 PIGL-212ENST00000581006 554 ntTSL 4 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 AC067750.1-201ENST00000608826 6545 ntBASIC15.39■□□□□ 0.05
PCDH9Q9HC56 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 RPS15-201ENST00000233609 534 ntTSL 2 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 MGST3-203ENST00000367885 680 ntTSL 2 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 PGGT1BP2-201ENST00000398621 1028 ntBASIC15.38■□□□□ 0.05
PCDH9Q9HC56 AL512384.1-201ENST00000406683 331 ntBASIC15.38■□□□□ 0.05
PCDH9Q9HC56 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 AC007389.4-201ENST00000454674 793 ntBASIC15.38■□□□□ 0.05
PCDH9Q9HC56 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 AC022137.2-201ENST00000503482 481 ntBASIC15.38■□□□□ 0.05
PCDH9Q9HC56 KRT18P25-201ENST00000508931 1278 ntBASIC15.38■□□□□ 0.05
PCDH9Q9HC56 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 PTP4A1P2-201ENST00000546033 454 ntBASIC15.38■□□□□ 0.05
PCDH9Q9HC56 MIR5189-201ENST00000577370 114 ntBASIC15.38■□□□□ 0.05
PCDH9Q9HC56 AC132938.2-201ENST00000579188 680 ntBASIC15.38■□□□□ 0.05
PCDH9Q9HC56 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 RPS15-205ENST00000586686 562 ntTSL 5 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 RPS15-208ENST00000591804 711 ntTSL 5 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 AL591163.1-201ENST00000641757 987 ntBASIC15.38■□□□□ 0.05
PCDH9Q9HC56 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH9Q9HC56 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 MST1P2-201ENST00000457982 2291 ntBASIC15.37■□□□□ 0.05
PCDH9Q9HC56 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC15.37■□□□□ 0.05
PCDH9Q9HC56 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms