Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 AC244394.1-201ENST00000435000 1665 ntBASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 NOP2-211ENST00000540228 668 ntTSL 2 BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 AC004899.1-201ENST00000424687 1714 ntBASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 CICP23-201ENST00000605013 2741 ntBASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4AQ9BY43 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
CHMP4AQ9BY43 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.62
CHMP4AQ9BY43 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC18.89■□□□□ 0.62
CHMP4AQ9BY43 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
CHMP4AQ9BY43 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CHMP4AQ9BY43 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC18.89■□□□□ 0.62
CHMP4AQ9BY43 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CHMP4AQ9BY43 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 HNRNPA1P27-201ENST00000412087 955 ntBASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 BX284668.4-201ENST00000453917 508 ntBASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 AC005730.2-201ENST00000564549 1184 ntBASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 AC244093.1-201ENST00000610837 814 ntBASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 RPL35-206ENST00000629845 340 ntTSL 5 BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4AQ9BY43 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 CCNC-217ENST00000523985 958 ntTSL 2 BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 AC013355.1-201ENST00000562625 723 ntBASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 MIR4783-201ENST00000580343 82 ntBASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 AC068587.8-201ENST00000641239 219 ntBASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4AQ9BY43 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 201.1 ms