Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 AC004554.1-201ENST00000422830 1468 ntBASIC19.76■□□□□ 0.75
NPHP3Q7Z494 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 PRAL-201ENST00000624952 3286 ntBASIC19.76■□□□□ 0.75
NPHP3Q7Z494 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 LINC01101-201ENST00000622953 1884 ntBASIC19.76■□□□□ 0.75
NPHP3Q7Z494 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 SCARNA12-201ENST00000459155 270 ntBASIC19.76■□□□□ 0.75
NPHP3Q7Z494 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 AC083801.1-201ENST00000491689 358 ntBASIC19.76■□□□□ 0.75
NPHP3Q7Z494 CISD2-202ENST00000503643 808 ntTSL 2 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 GDNF-207ENST00000515058 764 ntTSL 5 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 TREHP1-201ENST00000531328 465 ntBASIC19.76■□□□□ 0.75
NPHP3Q7Z494 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 SRP14-204ENST00000558720 780 ntTSL 2 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 AL627230.2-201ENST00000613254 655 ntBASIC19.76■□□□□ 0.75
NPHP3Q7Z494 HELLS-212ENST00000630929 400 ntTSL 5 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 API5-203ENST00000455725 2257 ntTSL 2 BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 OR2A1-AS1-210ENST00000496968 531 ntBASIC19.75■□□□□ 0.75
NPHP3Q7Z494 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms