Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 TPM3P8-201ENST00000330554 643 ntBASIC17.79■□□□□ 0.44
RNF20Q5VTR2 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 RN7SKP230-201ENST00000365642 335 ntBASIC17.79■□□□□ 0.44
RNF20Q5VTR2 GUK1-206ENST00000366723 845 ntTSL 5 BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 MIR3197-201ENST00000582241 73 ntBASIC17.79■□□□□ 0.44
RNF20Q5VTR2 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 SNX18-202ENST00000343017 3140 ntBASIC17.79■□□□□ 0.44
RNF20Q5VTR2 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RNF20Q5VTR2 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 C2orf27AP3-201ENST00000434123 579 ntBASIC17.78■□□□□ 0.44
RNF20Q5VTR2 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 INE1-201ENST00000456273 945 ntBASIC17.78■□□□□ 0.44
RNF20Q5VTR2 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 GCOM2-201ENST00000509133 1104 ntBASIC17.78■□□□□ 0.44
RNF20Q5VTR2 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 AL596325.1-201ENST00000563991 1082 ntBASIC17.78■□□□□ 0.44
RNF20Q5VTR2 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 AC025279.2-201ENST00000569730 653 ntBASIC17.78■□□□□ 0.44
RNF20Q5VTR2 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 AL354718.3-201ENST00000616414 581 ntBASIC17.78■□□□□ 0.44
RNF20Q5VTR2 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 CR382287.1-201ENST00000623954 586 ntBASIC17.78■□□□□ 0.44
RNF20Q5VTR2 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 TP73-213ENST00000604479 1623 ntTSL 5 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 CU639417.3-201ENST00000624240 1404 ntBASIC17.78■□□□□ 0.44
RNF20Q5VTR2 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC17.78■□□□□ 0.44
RNF20Q5VTR2 AC011840.2-201ENST00000563063 1520 ntBASIC17.77■□□□□ 0.44
RNF20Q5VTR2 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 FKBP4P6-201ENST00000457486 1332 ntBASIC17.77■□□□□ 0.44
RNF20Q5VTR2 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
RNF20Q5VTR2 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms