Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC88AQ3V6T2 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC88AQ3V6T2 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC88AQ3V6T2 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC88AQ3V6T2 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
CCDC88AQ3V6T2 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
CCDC88AQ3V6T2 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC88AQ3V6T2 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC88AQ3V6T2 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC17.77■□□□□ 0.43
CCDC88AQ3V6T2 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC17.77■□□□□ 0.43
CCDC88AQ3V6T2 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC17.77■□□□□ 0.43
CCDC88AQ3V6T2 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC17.77■□□□□ 0.43
CCDC88AQ3V6T2 AC068867.1-201ENST00000559855 150 ntBASIC17.77■□□□□ 0.43
CCDC88AQ3V6T2 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.43
CCDC88AQ3V6T2 AC021016.3-201ENST00000608367 477 ntBASIC17.77■□□□□ 0.43
CCDC88AQ3V6T2 AC090510.3-201ENST00000615831 821 ntBASIC17.77■□□□□ 0.43
CCDC88AQ3V6T2 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC17.77■□□□□ 0.43
CCDC88AQ3V6T2 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC88AQ3V6T2 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
CCDC88AQ3V6T2 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC88AQ3V6T2 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC88AQ3V6T2 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC17.77■□□□□ 0.43
CCDC88AQ3V6T2 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC88AQ3V6T2 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC88AQ3V6T2 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC17.77■□□□□ 0.43
CCDC88AQ3V6T2 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC17.77■□□□□ 0.43
CCDC88AQ3V6T2 SF1-209ENST00000433274 2317 ntTSL 2 BASIC17.77■□□□□ 0.43
CCDC88AQ3V6T2 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 AL929302.1-201ENST00000426556 871 ntBASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 AC092580.1-201ENST00000433998 658 ntBASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 AC083801.1-201ENST00000491689 358 ntBASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 AC018695.6-201ENST00000614011 534 ntBASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC88AQ3V6T2 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 HNRNPA1P58-201ENST00000403629 610 ntBASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 AC004522.1-201ENST00000419978 654 ntBASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 GSN-215ENST00000545652 2428 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 AC023157.3-201ENST00000619086 2088 ntBASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 AC092135.3-201ENST00000624151 1846 ntBASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 AC126177.1-201ENST00000547829 2218 ntBASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 AL672207.1-201ENST00000328462 1570 ntBASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 AL357373.1-201ENST00000394974 322 ntBASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 R3HDM2P2-201ENST00000401880 2116 ntBASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 AREG-202ENST00000502307 956 ntTSL 5 BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms