Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 FES-203ENST00000394302 2133 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 B9D1-203ENST00000395615 805 ntTSL 3 BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 HNRNPA1P32-201ENST00000396326 963 ntBASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 BX284668.4-201ENST00000453917 508 ntBASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 AC004066.1-201ENST00000502488 802 ntBASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 AC020914.3-201ENST00000594712 304 ntBASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 HSPA7-201ENST00000445535 1927 ntBASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 AC010327.5-201ENST00000586923 3061 ntBASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 CICP11-201ENST00000434745 2827 ntBASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 AL158070.2-201ENST00000623713 1621 ntBASIC17.29■□□□□ 0.36
CCDC144BQ3MJ40 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 AC136759.1-202ENST00000530858 2194 ntBASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 INTS4P1-203ENST00000641008 3683 ntBASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 SNX21-203ENST00000372541 771 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 HLA-DPB2-205ENST00000435074 1188 ntBASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 PTPA-218ENST00000435132 618 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 HSPB1P2-201ENST00000448722 546 ntBASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 AC005077.2-201ENST00000449786 690 ntBASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 RNA5SP423-201ENST00000517127 109 ntBASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 SLC9A7P1-202ENST00000556476 2239 ntBASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
CCDC144BQ3MJ40 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms