Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC15.22■□□□□ 0.03
CHD9Q3L8U1 AC091769.1-201ENST00000619576 568 ntBASIC15.22■□□□□ 0.03
CHD9Q3L8U1 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CHD9Q3L8U1 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CHD9Q3L8U1 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 CCL25-202ENST00000315626 450 ntTSL 2 BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 FAM197Y6-201ENST00000420524 766 ntBASIC15.21■□□□□ 0.03
CHD9Q3L8U1 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 RN7SL173P-201ENST00000461853 292 ntBASIC15.21■□□□□ 0.03
CHD9Q3L8U1 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 AC132872.4-202ENST00000622924 2756 ntBASIC15.21■□□□□ 0.03
CHD9Q3L8U1 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CHD9Q3L8U1 GAS5-209ENST00000430245 723 ntTSL 3 BASIC15.21■□□□□ 0.02
CHD9Q3L8U1 AC006328.1-201ENST00000437571 379 ntBASIC15.21■□□□□ 0.02
CHD9Q3L8U1 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC15.21■□□□□ 0.02
CHD9Q3L8U1 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC15.21■□□□□ 0.02
CHD9Q3L8U1 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC15.21■□□□□ 0.02
CHD9Q3L8U1 AC084262.1-201ENST00000567818 751 ntBASIC15.21■□□□□ 0.02
CHD9Q3L8U1 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC15.21■□□□□ 0.02
CHD9Q3L8U1 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CHD9Q3L8U1 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.02
CHD9Q3L8U1 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.02
CHD9Q3L8U1 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CHD9Q3L8U1 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC15.21■□□□□ 0.02
CHD9Q3L8U1 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
CHD9Q3L8U1 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
CHD9Q3L8U1 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC15.21■□□□□ 0.02
CHD9Q3L8U1 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
CHD9Q3L8U1 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 AL365181.1-201ENST00000564032 1828 ntBASIC15.2■□□□□ 0.02
CHD9Q3L8U1 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 MAGEA7P-201ENST00000436482 942 ntBASIC15.2■□□□□ 0.02
CHD9Q3L8U1 CDK4P1-201ENST00000454213 828 ntBASIC15.2■□□□□ 0.02
CHD9Q3L8U1 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 AC087203.1-201ENST00000532111 1181 ntBASIC15.2■□□□□ 0.02
CHD9Q3L8U1 HPX-213ENST00000615166 826 ntTSL 5 BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 FAU-201ENST00000279259 461 ntTSL 2 BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 BAX-205ENST00000391871 687 ntTSL 5 BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 AL365203.3-201ENST00000609742 2057 ntBASIC15.2■□□□□ 0.02
CHD9Q3L8U1 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC15.2■□□□□ 0.02
CHD9Q3L8U1 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.19■□□□□ 0.02
CHD9Q3L8U1 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC15.19■□□□□ 0.02
CHD9Q3L8U1 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHD9Q3L8U1 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CHD9Q3L8U1 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.19■□□□□ 0.02
CHD9Q3L8U1 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
CHD9Q3L8U1 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHD9Q3L8U1 AL121949.3-201ENST00000406684 385 ntBASIC15.19■□□□□ 0.02
CHD9Q3L8U1 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC15.19■□□□□ 0.02
CHD9Q3L8U1 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
CHD9Q3L8U1 RN7SL128P-201ENST00000467883 305 ntBASIC15.19■□□□□ 0.02
CHD9Q3L8U1 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC15.19■□□□□ 0.02
CHD9Q3L8U1 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC15.19■□□□□ 0.02
CHD9Q3L8U1 AC005746.3-201ENST00000614751 393 ntBASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms