Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HTTP42858 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.14■□□□□ 0.17
HTTP42858 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HTTP42858 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
HTTP42858 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC16.14■□□□□ 0.17
HTTP42858 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC16.14■□□□□ 0.17
HTTP42858 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC16.14■□□□□ 0.17
HTTP42858 AC091769.1-201ENST00000619576 568 ntBASIC16.14■□□□□ 0.17
HTTP42858 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC16.14■□□□□ 0.17
HTTP42858 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.14■□□□□ 0.17
HTTP42858 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.14■□□□□ 0.17
HTTP42858 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
HTTP42858 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC16.14■□□□□ 0.17
HTTP42858 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HTTP42858 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
HTTP42858 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.14■□□□□ 0.17
HTTP42858 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HTTP42858 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HTTP42858 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC16.14■□□□□ 0.17
HTTP42858 DKKL1P1-201ENST00000400550 698 ntBASIC16.14■□□□□ 0.17
HTTP42858 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC16.14■□□□□ 0.17
HTTP42858 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HTTP42858 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC16.14■□□□□ 0.17
HTTP42858 IGHVIII-5-2-201ENST00000522505 261 ntBASIC16.14■□□□□ 0.17
HTTP42858 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC16.14■□□□□ 0.17
HTTP42858 RN7SL602P-201ENST00000578326 324 ntBASIC16.14■□□□□ 0.17
HTTP42858 RN7SL718P-201ENST00000581254 303 ntBASIC16.14■□□□□ 0.17
HTTP42858 RN7SL300P-201ENST00000582522 318 ntBASIC16.14■□□□□ 0.17
HTTP42858 GAS7-216ENST00000583882 553 ntTSL 5 BASIC16.14■□□□□ 0.17
HTTP42858 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC16.13■□□□□ 0.17
HTTP42858 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.13■□□□□ 0.17
HTTP42858 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
HTTP42858 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
HTTP42858 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
HTTP42858 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
HTTP42858 ZNF877P-201ENST00000437614 612 ntBASIC16.13■□□□□ 0.17
HTTP42858 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC16.13■□□□□ 0.17
HTTP42858 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC16.13■□□□□ 0.17
HTTP42858 BIRC5-211ENST00000592734 386 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
HTTP42858 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 MARS-233ENST00000628866 2583 ntTSL 5 BASIC16.13■□□□□ 0.17
HTTP42858 AL365181.1-201ENST00000564032 1828 ntBASIC16.13■□□□□ 0.17
HTTP42858 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.13■□□□□ 0.17
HTTP42858 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.13■□□□□ 0.17
HTTP42858 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.13■□□□□ 0.17
HTTP42858 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
HTTP42858 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 KRT8P6-201ENST00000399259 1207 ntBASIC16.13■□□□□ 0.17
HTTP42858 GGTLC4P-201ENST00000402176 664 ntBASIC16.13■□□□□ 0.17
HTTP42858 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC16.13■□□□□ 0.17
HTTP42858 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC16.13■□□□□ 0.17
HTTP42858 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC16.13■□□□□ 0.17
HTTP42858 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC16.13■□□□□ 0.17
HTTP42858 MIR4254-201ENST00000581063 76 ntBASIC16.13■□□□□ 0.17
HTTP42858 AC021321.1-201ENST00000607397 1113 ntBASIC16.13■□□□□ 0.17
HTTP42858 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
HTTP42858 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC16.13■□□□□ 0.17
HTTP42858 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HTTP42858 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.13■□□□□ 0.17
HTTP42858 AP005117.1-202ENST00000581724 1908 ntBASIC16.12■□□□□ 0.17
HTTP42858 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC16.12■□□□□ 0.17
HTTP42858 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC16.12■□□□□ 0.17
HTTP42858 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC16.12■□□□□ 0.17
HTTP42858 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC16.12■□□□□ 0.17
HTTP42858 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC16.12■□□□□ 0.17
HTTP42858 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HTTP42858 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
HTTP42858 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC16.12■□□□□ 0.17
HTTP42858 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HTTP42858 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC16.12■□□□□ 0.17
HTTP42858 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
HTTP42858 MROH4P-201ENST00000431302 1578 ntBASIC16.12■□□□□ 0.17
HTTP42858 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HTTP42858 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC16.12■□□□□ 0.17
HTTP42858 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HTTP42858 MIR2278-201ENST00000516344 96 ntBASIC16.12■□□□□ 0.17
HTTP42858 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC16.12■□□□□ 0.17
HTTP42858 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms