Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL18A1P39060 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL18A1P39060 PIFO-201ENST00000369737 746 ntTSL 2 BASIC18.93■□□□□ 0.62
COL18A1P39060 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC18.93■□□□□ 0.62
COL18A1P39060 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC18.93■□□□□ 0.62
COL18A1P39060 GDNF-207ENST00000515058 764 ntTSL 5 BASIC18.93■□□□□ 0.62
COL18A1P39060 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC18.93■□□□□ 0.62
COL18A1P39060 GOLGA2P7-209ENST00000560408 745 ntBASIC18.93■□□□□ 0.62
COL18A1P39060 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC18.93■□□□□ 0.62
COL18A1P39060 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC18.93■□□□□ 0.62
COL18A1P39060 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
COL18A1P39060 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL18A1P39060 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.93■□□□□ 0.62
COL18A1P39060 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
COL18A1P39060 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
COL18A1P39060 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC18.93■□□□□ 0.62
COL18A1P39060 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL18A1P39060 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC18.93■□□□□ 0.62
COL18A1P39060 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL18A1P39060 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL18A1P39060 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL18A1P39060 AC215219.1-201ENST00000400706 1817 ntBASIC18.93■□□□□ 0.62
COL18A1P39060 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL18A1P39060 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL18A1P39060 AC092573.1-201ENST00000433054 884 ntBASIC18.93■□□□□ 0.62
COL18A1P39060 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC18.93■□□□□ 0.62
COL18A1P39060 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC18.93■□□□□ 0.62
COL18A1P39060 COQ4-204ENST00000608951 781 ntTSL 2 BASIC18.93■□□□□ 0.62
COL18A1P39060 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC18.93■□□□□ 0.62
COL18A1P39060 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC18.93■□□□□ 0.62
COL18A1P39060 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC18.93■□□□□ 0.62
COL18A1P39060 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL18A1P39060 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
COL18A1P39060 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC18.92■□□□□ 0.62
COL18A1P39060 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL18A1P39060 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
COL18A1P39060 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC18.92■□□□□ 0.62
COL18A1P39060 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC18.92■□□□□ 0.62
COL18A1P39060 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL18A1P39060 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC18.92■□□□□ 0.62
COL18A1P39060 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL18A1P39060 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL18A1P39060 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
COL18A1P39060 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL18A1P39060 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC18.92■□□□□ 0.62
COL18A1P39060 PSAT1P2-201ENST00000426107 972 ntBASIC18.92■□□□□ 0.62
COL18A1P39060 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC18.92■□□□□ 0.62
COL18A1P39060 AC063952.3-201ENST00000467756 308 ntBASIC18.92■□□□□ 0.62
COL18A1P39060 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC18.92■□□□□ 0.62
COL18A1P39060 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC18.92■□□□□ 0.62
COL18A1P39060 SLC25A15P3-201ENST00000505530 290 ntBASIC18.92■□□□□ 0.62
COL18A1P39060 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL18A1P39060 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC18.92■□□□□ 0.62
COL18A1P39060 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL18A1P39060 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL18A1P39060 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC18.92■□□□□ 0.62
COL18A1P39060 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL18A1P39060 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL18A1P39060 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL18A1P39060 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC18.92■□□□□ 0.62
COL18A1P39060 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC18.92■□□□□ 0.62
COL18A1P39060 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL18A1P39060 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL18A1P39060 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL18A1P39060 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL18A1P39060 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
COL18A1P39060 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL18A1P39060 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL18A1P39060 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL18A1P39060 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
COL18A1P39060 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL18A1P39060 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
COL18A1P39060 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL18A1P39060 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
COL18A1P39060 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC18.91■□□□□ 0.62
COL18A1P39060 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
COL18A1P39060 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC18.91■□□□□ 0.62
COL18A1P39060 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC18.91■□□□□ 0.62
COL18A1P39060 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC18.91■□□□□ 0.62
COL18A1P39060 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
COL18A1P39060 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC18.91■□□□□ 0.62
COL18A1P39060 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC18.91■□□□□ 0.62
COL18A1P39060 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
COL18A1P39060 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC18.91■□□□□ 0.62
COL18A1P39060 PRSS3P1-201ENST00000503996 742 ntBASIC18.91■□□□□ 0.62
COL18A1P39060 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC18.91■□□□□ 0.62
COL18A1P39060 MBP-238ENST00000580402 915 ntTSL 5 BASIC18.91■□□□□ 0.62
COL18A1P39060 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC18.91■□□□□ 0.62
COL18A1P39060 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL18A1P39060 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC18.91■□□□□ 0.62
COL18A1P39060 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC18.91■□□□□ 0.62
COL18A1P39060 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
COL18A1P39060 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.91■□□□□ 0.62
COL18A1P39060 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL18A1P39060 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL18A1P39060 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
COL18A1P39060 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC18.91■□□□□ 0.62
COL18A1P39060 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
COL18A1P39060 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL18A1P39060 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms