Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL9A1P20849 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL9A1P20849 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.17■□□□□ 0.02
COL9A1P20849 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL9A1P20849 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL9A1P20849 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
COL9A1P20849 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC15.17■□□□□ 0.02
COL9A1P20849 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL9A1P20849 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL9A1P20849 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL9A1P20849 MIR557-201ENST00000385239 98 ntBASIC15.17■□□□□ 0.02
COL9A1P20849 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC15.17■□□□□ 0.02
COL9A1P20849 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL9A1P20849 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC15.17■□□□□ 0.02
COL9A1P20849 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL9A1P20849 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC15.17■□□□□ 0.02
COL9A1P20849 MTND2P11-201ENST00000423638 648 ntBASIC15.17■□□□□ 0.02
COL9A1P20849 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC15.17■□□□□ 0.02
COL9A1P20849 KRT8P30-201ENST00000432100 650 ntBASIC15.17■□□□□ 0.02
COL9A1P20849 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC15.17■□□□□ 0.02
COL9A1P20849 DPY19L2P5-201ENST00000456300 331 ntBASIC15.17■□□□□ 0.02
COL9A1P20849 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL9A1P20849 ORAOV1P1-201ENST00000503108 395 ntBASIC15.17■□□□□ 0.02
COL9A1P20849 GPX3-202ENST00000517973 612 ntTSL 3 BASIC15.17■□□□□ 0.02
COL9A1P20849 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL9A1P20849 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC15.17■□□□□ 0.02
COL9A1P20849 ETFRF1-209ENST00000556885 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL9A1P20849 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC15.17■□□□□ 0.02
COL9A1P20849 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC15.17■□□□□ 0.02
COL9A1P20849 PHBP15-201ENST00000574228 665 ntBASIC15.17■□□□□ 0.02
COL9A1P20849 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC15.17■□□□□ 0.02
COL9A1P20849 SRD5A3-AS1-203ENST00000591915 709 ntTSL 5 BASIC15.17■□□□□ 0.02
COL9A1P20849 MEG3_2.1-201ENST00000611456 105 ntBASIC15.17■□□□□ 0.02
COL9A1P20849 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC15.17■□□□□ 0.02
COL9A1P20849 CHD2-218ENST00000629346 1249 ntTSL 5 BASIC15.17■□□□□ 0.02
COL9A1P20849 AC002472.3-201ENST00000640124 621 ntBASIC15.17■□□□□ 0.02
COL9A1P20849 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC15.17■□□□□ 0.02
COL9A1P20849 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL9A1P20849 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL9A1P20849 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL9A1P20849 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL9A1P20849 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.17■□□□□ 0.02
COL9A1P20849 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC15.17■□□□□ 0.02
COL9A1P20849 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL9A1P20849 AC021305.1-201ENST00000520656 1514 ntBASIC15.17■□□□□ 0.02
COL9A1P20849 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC15.17■□□□□ 0.02
COL9A1P20849 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL9A1P20849 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL9A1P20849 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL9A1P20849 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
COL9A1P20849 AC020910.5-201ENST00000623668 1865 ntBASIC15.16■□□□□ 0.02
COL9A1P20849 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL9A1P20849 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL9A1P20849 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL9A1P20849 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC15.16■□□□□ 0.02
COL9A1P20849 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL9A1P20849 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL9A1P20849 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
COL9A1P20849 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL9A1P20849 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL9A1P20849 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL9A1P20849 BAX-205ENST00000391871 687 ntTSL 5 BASIC15.16■□□□□ 0.02
COL9A1P20849 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL9A1P20849 DNM1P48-201ENST00000419538 439 ntBASIC15.16■□□□□ 0.02
COL9A1P20849 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC15.16■□□□□ 0.02
COL9A1P20849 AC013436.1-201ENST00000425077 422 ntTSL 3 BASIC15.16■□□□□ 0.02
COL9A1P20849 VN1R53P-201ENST00000429536 957 ntBASIC15.16■□□□□ 0.02
COL9A1P20849 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC15.16■□□□□ 0.02
COL9A1P20849 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC15.16■□□□□ 0.02
COL9A1P20849 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC15.16■□□□□ 0.02
COL9A1P20849 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL9A1P20849 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC15.16■□□□□ 0.02
COL9A1P20849 EEF1DP7-201ENST00000580496 513 ntBASIC15.16■□□□□ 0.02
COL9A1P20849 NAT9-219ENST00000582524 573 ntTSL 4 BASIC15.16■□□□□ 0.02
COL9A1P20849 CYP4F36P-201ENST00000589193 186 ntBASIC15.16■□□□□ 0.02
COL9A1P20849 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL9A1P20849 AC022079.1-201ENST00000621546 602 ntBASIC15.16■□□□□ 0.02
COL9A1P20849 CMC2-224ENST00000630396 481 ntTSL 5 BASIC15.16■□□□□ 0.02
COL9A1P20849 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC15.16■□□□□ 0.02
COL9A1P20849 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC15.16■□□□□ 0.02
COL9A1P20849 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.16■□□□□ 0.02
COL9A1P20849 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
COL9A1P20849 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC15.16■□□□□ 0.02
COL9A1P20849 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL9A1P20849 AC011840.2-201ENST00000563063 1520 ntBASIC15.16■□□□□ 0.02
COL9A1P20849 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL9A1P20849 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.16■□□□□ 0.02
COL9A1P20849 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL9A1P20849 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL9A1P20849 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
COL9A1P20849 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL9A1P20849 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.16■□□□□ 0.02
COL9A1P20849 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL9A1P20849 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.16■□□□□ 0.02
COL9A1P20849 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL9A1P20849 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC15.16■□□□□ 0.02
COL9A1P20849 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.16■□□□□ 0.02
COL9A1P20849 PCDHA1-201ENST00000378133 2726 ntBASIC15.16■□□□□ 0.02
COL9A1P20849 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL9A1P20849 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms