Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A3P12111 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC14.92□□□□□ -0.02
COL6A3P12111 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
COL6A3P12111 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A3P12111 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A3P12111 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.91□□□□□ -0.02
COL6A3P12111 GRP-201ENST00000256857 848 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A3P12111 IMMP1L-201ENST00000278200 795 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
COL6A3P12111 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A3P12111 ZNF32-AS2-201ENST00000418966 905 ntTSL 5 BASIC14.91□□□□□ -0.02
COL6A3P12111 AC138392.1-201ENST00000427577 921 ntBASIC14.91□□□□□ -0.02
COL6A3P12111 GHRL-206ENST00000430179 856 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A3P12111 KLF17P1-201ENST00000547105 1126 ntBASIC14.91□□□□□ -0.02
COL6A3P12111 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A3P12111 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A3P12111 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A3P12111 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A3P12111 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A3P12111 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
COL6A3P12111 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A3P12111 SAT1-201ENST00000379251 801 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A3P12111 SAT1-202ENST00000379253 909 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A3P12111 SAT1-203ENST00000379254 868 ntTSL 3 BASIC14.91□□□□□ -0.02
COL6A3P12111 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A3P12111 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A3P12111 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A3P12111 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC14.91□□□□□ -0.02
COL6A3P12111 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A3P12111 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A3P12111 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A3P12111 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A3P12111 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A3P12111 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A3P12111 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A3P12111 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A3P12111 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC14.91□□□□□ -0.02
COL6A3P12111 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC14.91□□□□□ -0.02
COL6A3P12111 IQCF4-203ENST00000428561 420 ntBASIC14.91□□□□□ -0.02
COL6A3P12111 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A3P12111 AL355500.1-201ENST00000439421 297 ntTSL 3 BASIC14.91□□□□□ -0.02
COL6A3P12111 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A3P12111 CHCHD2P6-201ENST00000454346 447 ntBASIC14.91□□□□□ -0.02
COL6A3P12111 AC109830.1-203ENST00000506638 467 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A3P12111 AC015922.3-201ENST00000582780 347 ntTSL 3 BASIC14.91□□□□□ -0.02
COL6A3P12111 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
COL6A3P12111 LILRP1-201ENST00000444199 1370 ntBASIC14.91□□□□□ -0.02
COL6A3P12111 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A3P12111 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A3P12111 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
COL6A3P12111 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A3P12111 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
COL6A3P12111 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A3P12111 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A3P12111 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC14.9□□□□□ -0.02
COL6A3P12111 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A3P12111 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A3P12111 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A3P12111 KCNMA1-AS1-201ENST00000426234 863 ntTSL 5 BASIC14.9□□□□□ -0.02
COL6A3P12111 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC14.9□□□□□ -0.02
COL6A3P12111 TRBV11-2-201ENST00000471935 408 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A3P12111 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC14.9□□□□□ -0.02
COL6A3P12111 AL035427.1-201ENST00000602441 387 ntTSL 3 BASIC14.9□□□□□ -0.02
COL6A3P12111 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A3P12111 INCA1-201ENST00000355025 1383 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A3P12111 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.9□□□□□ -0.02
COL6A3P12111 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
COL6A3P12111 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A3P12111 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
COL6A3P12111 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A3P12111 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A3P12111 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A3P12111 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.9□□□□□ -0.02
COL6A3P12111 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A3P12111 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A3P12111 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A3P12111 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL6A3P12111 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.9□□□□□ -0.02
COL6A3P12111 AC103724.2-201ENST00000520355 476 ntBASIC14.9□□□□□ -0.02
COL6A3P12111 AC091691.1-201ENST00000583587 1018 ntBASIC14.9□□□□□ -0.02
COL6A3P12111 ITGB2-AS1-204ENST00000609592 482 ntTSL 5 BASIC14.9□□□□□ -0.02
COL6A3P12111 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
COL6A3P12111 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.9□□□□□ -0.02
COL6A3P12111 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
COL6A3P12111 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
COL6A3P12111 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A3P12111 MYL1-202ENST00000352451 1065 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A3P12111 MKL1-204ENST00000402630 747 ntTSL 2 BASIC14.89□□□□□ -0.03
COL6A3P12111 TUBB2BP1-201ENST00000404155 871 ntBASIC14.89□□□□□ -0.03
COL6A3P12111 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
COL6A3P12111 AL358215.1-201ENST00000481350 482 ntTSL 5 BASIC14.89□□□□□ -0.03
COL6A3P12111 AC022784.6-203ENST00000520255 863 ntTSL 3 BASIC14.89□□□□□ -0.03
COL6A3P12111 SNHG15-210ENST00000585030 953 ntTSL 3 BASIC14.89□□□□□ -0.03
COL6A3P12111 AC114488.2-208ENST00000591592 578 ntTSL 5 BASIC14.89□□□□□ -0.03
COL6A3P12111 USE1-207ENST00000596136 637 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A3P12111 BX510359.7-201ENST00000619819 630 ntBASIC14.89□□□□□ -0.03
COL6A3P12111 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A3P12111 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC14.89□□□□□ -0.03
COL6A3P12111 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC14.89□□□□□ -0.03
COL6A3P12111 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A3P12111 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms