Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA1O95477 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA1O95477 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
ABCA1O95477 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC12.55□□□□□ -0.4
ABCA1O95477 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
ABCA1O95477 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA1O95477 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA1O95477 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC12.55□□□□□ -0.4
ABCA1O95477 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC12.55□□□□□ -0.4
ABCA1O95477 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA1O95477 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC12.55□□□□□ -0.4
ABCA1O95477 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
ABCA1O95477 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA1O95477 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA1O95477 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA1O95477 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA1O95477 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC12.55□□□□□ -0.4
ABCA1O95477 Z97180.1-201ENST00000445173 988 ntBASIC12.55□□□□□ -0.4
ABCA1O95477 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC12.55□□□□□ -0.4
ABCA1O95477 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC12.55□□□□□ -0.4
ABCA1O95477 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC12.55□□□□□ -0.4
ABCA1O95477 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC12.55□□□□□ -0.4
ABCA1O95477 AL161670.2-201ENST00000557650 1227 ntBASIC12.55□□□□□ -0.4
ABCA1O95477 EID1-202ENST00000560490 584 ntTSL 3 BASIC12.55□□□□□ -0.4
ABCA1O95477 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC12.55□□□□□ -0.4
ABCA1O95477 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA1O95477 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
ABCA1O95477 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC12.55□□□□□ -0.4
ABCA1O95477 ENPP7P14-201ENST00000621765 1040 ntBASIC12.55□□□□□ -0.4
ABCA1O95477 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA1O95477 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA1O95477 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA1O95477 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA1O95477 BID-213ENST00000615414 2236 ntTSL 5 BASIC12.55□□□□□ -0.4
ABCA1O95477 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA1O95477 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC12.55□□□□□ -0.4
ABCA1O95477 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC12.55□□□□□ -0.4
ABCA1O95477 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC12.55□□□□□ -0.4
ABCA1O95477 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC12.55□□□□□ -0.4
ABCA1O95477 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA1O95477 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC12.55□□□□□ -0.4
ABCA1O95477 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA1O95477 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA1O95477 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA1O95477 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC12.55□□□□□ -0.4
ABCA1O95477 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC12.55□□□□□ -0.4
ABCA1O95477 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA1O95477 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC12.54□□□□□ -0.4
ABCA1O95477 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
ABCA1O95477 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC12.54□□□□□ -0.4
ABCA1O95477 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA1O95477 AC092384.3-202ENST00000564646 2873 ntBASIC12.54□□□□□ -0.4
ABCA1O95477 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA1O95477 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA1O95477 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA1O95477 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA1O95477 RPS15-201ENST00000233609 534 ntTSL 2 BASIC12.54□□□□□ -0.4
ABCA1O95477 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA1O95477 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC12.54□□□□□ -0.4
ABCA1O95477 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC12.54□□□□□ -0.4
ABCA1O95477 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA1O95477 AC007274.2-201ENST00000421675 662 ntBASIC12.54□□□□□ -0.4
ABCA1O95477 RN7SL181P-201ENST00000462921 277 ntBASIC12.54□□□□□ -0.4
ABCA1O95477 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA1O95477 AC004066.1-201ENST00000502488 802 ntBASIC12.54□□□□□ -0.4
ABCA1O95477 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC12.54□□□□□ -0.4
ABCA1O95477 AC106820.3-201ENST00000561653 397 ntBASIC12.54□□□□□ -0.4
ABCA1O95477 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC12.54□□□□□ -0.4
ABCA1O95477 RPS15-205ENST00000586686 562 ntTSL 5 BASIC12.54□□□□□ -0.4
ABCA1O95477 RPS15-208ENST00000591804 711 ntTSL 5 BASIC12.54□□□□□ -0.4
ABCA1O95477 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA1O95477 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA1O95477 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA1O95477 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
ABCA1O95477 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC12.54□□□□□ -0.4
ABCA1O95477 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA1O95477 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC12.54□□□□□ -0.4
ABCA1O95477 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC12.54□□□□□ -0.4
ABCA1O95477 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
ABCA1O95477 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
ABCA1O95477 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
ABCA1O95477 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA1O95477 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA1O95477 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA1O95477 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
ABCA1O95477 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA1O95477 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC12.54□□□□□ -0.4
ABCA1O95477 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA1O95477 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA1O95477 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA1O95477 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
ABCA1O95477 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA1O95477 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA1O95477 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA1O95477 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
ABCA1O95477 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
ABCA1O95477 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC12.54□□□□□ -0.4
ABCA1O95477 LBH-202ENST00000401506 485 ntTSL 3 BASIC12.54□□□□□ -0.4
ABCA1O95477 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA1O95477 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC12.54□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms