Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
MSH4O15457 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC16.62■□□□□ 0.25
MSH4O15457 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC16.62■□□□□ 0.25
MSH4O15457 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC16.62■□□□□ 0.25
MSH4O15457 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH4O15457 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH4O15457 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH4O15457 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH4O15457 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH4O15457 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH4O15457 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH4O15457 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH4O15457 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
MSH4O15457 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH4O15457 AC113367.3-201ENST00000508316 1912 ntBASIC16.61■□□□□ 0.25
MSH4O15457 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
MSH4O15457 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
MSH4O15457 AC140479.7-201ENST00000636301 2332 ntBASIC16.61■□□□□ 0.25
MSH4O15457 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
MSH4O15457 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH4O15457 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
MSH4O15457 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC16.61■□□□□ 0.25
MSH4O15457 MIR1247-201ENST00000408206 136 ntBASIC16.61■□□□□ 0.25
MSH4O15457 HNRNPA1P27-201ENST00000412087 955 ntBASIC16.61■□□□□ 0.25
MSH4O15457 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC16.61■□□□□ 0.25
MSH4O15457 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC16.61■□□□□ 0.25
MSH4O15457 PTPA-215ENST00000432124 567 ntTSL 4 BASIC16.61■□□□□ 0.25
MSH4O15457 TUBB8P8-201ENST00000458717 1058 ntBASIC16.61■□□□□ 0.25
MSH4O15457 SERPINA13P-202ENST00000478994 924 ntBASIC16.61■□□□□ 0.25
MSH4O15457 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC16.61■□□□□ 0.25
MSH4O15457 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC16.61■□□□□ 0.25
MSH4O15457 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH4O15457 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MSH4O15457 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC16.61■□□□□ 0.25
MSH4O15457 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC16.61■□□□□ 0.25
MSH4O15457 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH4O15457 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
MSH4O15457 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH4O15457 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC16.61■□□□□ 0.25
MSH4O15457 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MSH4O15457 AGGF1P1-201ENST00000509500 2073 ntBASIC16.61■□□□□ 0.25
MSH4O15457 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MSH4O15457 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
MSH4O15457 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MSH4O15457 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH4O15457 AC020907.1-201ENST00000616460 1350 ntBASIC16.61■□□□□ 0.25
MSH4O15457 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH4O15457 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH4O15457 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
MSH4O15457 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
MSH4O15457 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC16.6■□□□□ 0.25
MSH4O15457 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSH4O15457 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
MSH4O15457 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC16.6■□□□□ 0.25
MSH4O15457 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSH4O15457 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC16.6■□□□□ 0.25
MSH4O15457 AC004899.1-201ENST00000424687 1714 ntBASIC16.6■□□□□ 0.25
MSH4O15457 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSH4O15457 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSH4O15457 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
MSH4O15457 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC16.6■□□□□ 0.25
MSH4O15457 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC16.6■□□□□ 0.25
MSH4O15457 FAM58BP-201ENST00000439056 645 ntBASIC16.6■□□□□ 0.25
MSH4O15457 OARD1-212ENST00000482515 832 ntTSL 2 BASIC16.6■□□□□ 0.25
MSH4O15457 AC044849.1-201ENST00000519737 1188 ntBASIC16.6■□□□□ 0.25
MSH4O15457 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC16.6■□□□□ 0.25
MSH4O15457 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC16.6■□□□□ 0.25
MSH4O15457 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC16.6■□□□□ 0.25
MSH4O15457 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC16.6■□□□□ 0.25
MSH4O15457 NKG7-204ENST00000595217 816 ntTSL 2 BASIC16.6■□□□□ 0.25
MSH4O15457 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
MSH4O15457 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC16.6■□□□□ 0.25
MSH4O15457 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
MSH4O15457 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSH4O15457 AL008718.2-201ENST00000609206 1313 ntBASIC16.6■□□□□ 0.25
MSH4O15457 AC007686.3-201ENST00000619017 3487 ntBASIC16.6■□□□□ 0.25
MSH4O15457 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC16.6■□□□□ 0.25
MSH4O15457 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC16.6■□□□□ 0.25
MSH4O15457 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
MSH4O15457 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSH4O15457 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC16.6■□□□□ 0.25
MSH4O15457 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
MSH4O15457 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSH4O15457 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSH4O15457 TMBIM7P-202ENST00000641474 1516 ntBASIC16.6■□□□□ 0.25
MSH4O15457 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSH4O15457 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH4O15457 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH4O15457 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MSH4O15457 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MSH4O15457 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH4O15457 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC16.59■□□□□ 0.25
MSH4O15457 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH4O15457 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms