Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC27.91■■■□□ 2.06
SHROOM4Q9ULL8 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 AL583805.1-201ENST00000391389 531 ntBASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 DDX39AP1-201ENST00000445147 1181 ntBASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 FTH1P22-201ENST00000456305 520 ntBASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 AC073592.2-201ENST00000623062 780 ntBASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC27.9■■■□□ 2.06
SHROOM4Q9ULL8 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 AL592076.1-201ENST00000424448 303 ntBASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 HCG27-204ENST00000424675 895 ntTSL 3 BASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 AL645933.1-201ENST00000440087 609 ntBASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 AC024293.1-201ENST00000467930 498 ntBASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 AREG-202ENST00000502307 956 ntTSL 5 BASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 MRPL22P1-201ENST00000505398 616 ntBASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 NAMA-206ENST00000605377 509 ntTSL 5 BASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 MIR6720-201ENST00000611664 98 ntBASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC27.89■■■□□ 2.06
SHROOM4Q9ULL8 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC27.89■■■□□ 2.05
SHROOM4Q9ULL8 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC27.89■■■□□ 2.05
SHROOM4Q9ULL8 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC27.89■■■□□ 2.05
SHROOM4Q9ULL8 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC27.89■■■□□ 2.05
SHROOM4Q9ULL8 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC27.89■■■□□ 2.05
SHROOM4Q9ULL8 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.05
SHROOM4Q9ULL8 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC27.89■■■□□ 2.05
SHROOM4Q9ULL8 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC27.89■■■□□ 2.05
SHROOM4Q9ULL8 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC27.89■■■□□ 2.05
SHROOM4Q9ULL8 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.05
SHROOM4Q9ULL8 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC27.89■■■□□ 2.05
SHROOM4Q9ULL8 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC27.88■■■□□ 2.05
SHROOM4Q9ULL8 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
SHROOM4Q9ULL8 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC27.88■■■□□ 2.05
SHROOM4Q9ULL8 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC27.88■■■□□ 2.05
SHROOM4Q9ULL8 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
SHROOM4Q9ULL8 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC27.88■■■□□ 2.05
SHROOM4Q9ULL8 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
SHROOM4Q9ULL8 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
SHROOM4Q9ULL8 WASH3P-207ENST00000560956 1394 ntBASIC27.88■■■□□ 2.05
SHROOM4Q9ULL8 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
SHROOM4Q9ULL8 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC27.88■■■□□ 2.05
SHROOM4Q9ULL8 CASK-202ENST00000378158 3848 ntTSL 5 BASIC27.88■■■□□ 2.05
SHROOM4Q9ULL8 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC27.88■■■□□ 2.05
SHROOM4Q9ULL8 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC27.88■■■□□ 2.05
SHROOM4Q9ULL8 AC092638.2-201ENST00000441105 947 ntBASIC27.88■■■□□ 2.05
SHROOM4Q9ULL8 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
SHROOM4Q9ULL8 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC27.88■■■□□ 2.05
SHROOM4Q9ULL8 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
SHROOM4Q9ULL8 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
SHROOM4Q9ULL8 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
SHROOM4Q9ULL8 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC27.87■■■□□ 2.05
SHROOM4Q9ULL8 CYP4F23P-201ENST00000593402 1579 ntBASIC27.87■■■□□ 2.05
SHROOM4Q9ULL8 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms