Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 KRT18P66-201ENST00000452970 1269 ntBASIC18.6■□□□□ 0.57
SCN11AQ9UI33 AC005740.1-201ENST00000515639 522 ntBASIC18.6■□□□□ 0.57
SCN11AQ9UI33 IGHV1-12-201ENST00000518307 205 ntBASIC18.6■□□□□ 0.57
SCN11AQ9UI33 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 AL132994.1-201ENST00000554098 400 ntBASIC18.6■□□□□ 0.57
SCN11AQ9UI33 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 AC138466.5-201ENST00000624002 808 ntBASIC18.6■□□□□ 0.57
SCN11AQ9UI33 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 MARS-233ENST00000628866 2583 ntTSL 5 BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 LINC00265-2P-201ENST00000413372 782 ntBASIC18.6■□□□□ 0.57
SCN11AQ9UI33 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 SKA2-205ENST00000580541 689 ntTSL 3 BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 AP000322.3-201ENST00000608665 388 ntBASIC18.6■□□□□ 0.57
SCN11AQ9UI33 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SCN11AQ9UI33 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 LINC00634-202ENST00000505157 222 ntBASIC18.59■□□□□ 0.57
SCN11AQ9UI33 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC18.59■□□□□ 0.57
SCN11AQ9UI33 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SCN11AQ9UI33 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SCN11AQ9UI33 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SCN11AQ9UI33 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC18.58■□□□□ 0.57
SCN11AQ9UI33 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SCN11AQ9UI33 EEF1DP2-201ENST00000433698 843 ntBASIC18.58■□□□□ 0.57
SCN11AQ9UI33 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC18.58■□□□□ 0.57
SCN11AQ9UI33 RN7SL564P-201ENST00000496309 250 ntBASIC18.58■□□□□ 0.57
SCN11AQ9UI33 RPS23-204ENST00000507980 836 ntTSL 2 BASIC18.58■□□□□ 0.57
SCN11AQ9UI33 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SCN11AQ9UI33 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC18.58■□□□□ 0.57
SCN11AQ9UI33 KRT8P2-201ENST00000556193 944 ntBASIC18.58■□□□□ 0.57
SCN11AQ9UI33 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC18.58■□□□□ 0.57
SCN11AQ9UI33 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC18.58■□□□□ 0.57
SCN11AQ9UI33 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC18.58■□□□□ 0.57
SCN11AQ9UI33 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
SCN11AQ9UI33 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SCN11AQ9UI33 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SCN11AQ9UI33 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC18.58■□□□□ 0.57
SCN11AQ9UI33 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
SCN11AQ9UI33 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.58■□□□□ 0.57
SCN11AQ9UI33 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SCN11AQ9UI33 CYP51A1P3-201ENST00000400072 1428 ntBASIC18.58■□□□□ 0.56
SCN11AQ9UI33 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
SCN11AQ9UI33 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SCN11AQ9UI33 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
SCN11AQ9UI33 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SCN11AQ9UI33 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SCN11AQ9UI33 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
SCN11AQ9UI33 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms