Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC004066.1-201ENST00000502488 802 ntBASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 SERF2-217ENST00000630046 862 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC17.33■□□□□ 0.37
CCDC39Q9UFE4 AP000845.1-201ENST00000581677 2131 ntBASIC17.33■□□□□ 0.37
CCDC39Q9UFE4 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC17.33■□□□□ 0.37
CCDC39Q9UFE4 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC39Q9UFE4 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC39Q9UFE4 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC39Q9UFE4 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC39Q9UFE4 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC39Q9UFE4 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC17.33■□□□□ 0.37
CCDC39Q9UFE4 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC39Q9UFE4 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC39Q9UFE4 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC39Q9UFE4 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC39Q9UFE4 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC39Q9UFE4 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC39Q9UFE4 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 SPDYE19P-201ENST00000338590 713 ntBASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 FAM86LP-201ENST00000478302 853 ntBASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 AC023310.3-201ENST00000557027 670 ntBASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 AC100756.1-201ENST00000562736 682 ntBASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 AC138749.3-201ENST00000567691 622 ntBASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 SAMD11P1-201ENST00000571429 661 ntBASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 INO80C-210ENST00000590757 595 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 AC116165.1-201ENST00000611806 668 ntBASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
CCDC39Q9UFE4 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 AC018442.1-201ENST00000421439 2061 ntBASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 REXO1L4P-201ENST00000605109 1937 ntBASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC39Q9UFE4 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 140.3 ms