Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VTA1Q9NP79 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VTA1Q9NP79 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VTA1Q9NP79 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.52■□□□□ 0.23
VTA1Q9NP79 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC16.51■□□□□ 0.23
VTA1Q9NP79 AC015909.3-201ENST00000572855 1794 ntBASIC16.51■□□□□ 0.23
VTA1Q9NP79 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VTA1Q9NP79 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VTA1Q9NP79 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VTA1Q9NP79 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VTA1Q9NP79 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VTA1Q9NP79 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VTA1Q9NP79 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
VTA1Q9NP79 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VTA1Q9NP79 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VTA1Q9NP79 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VTA1Q9NP79 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VTA1Q9NP79 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC16.51■□□□□ 0.23
VTA1Q9NP79 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VTA1Q9NP79 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VTA1Q9NP79 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC16.51■□□□□ 0.23
VTA1Q9NP79 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC16.51■□□□□ 0.23
VTA1Q9NP79 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC16.51■□□□□ 0.23
VTA1Q9NP79 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC16.51■□□□□ 0.23
VTA1Q9NP79 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
VTA1Q9NP79 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC16.51■□□□□ 0.23
VTA1Q9NP79 TPM1-223ENST00000560445 485 ntTSL 3 BASIC16.51■□□□□ 0.23
VTA1Q9NP79 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC16.51■□□□□ 0.23
VTA1Q9NP79 RN7SL555P-201ENST00000584742 339 ntBASIC16.51■□□□□ 0.23
VTA1Q9NP79 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC16.51■□□□□ 0.23
VTA1Q9NP79 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VTA1Q9NP79 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VTA1Q9NP79 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VTA1Q9NP79 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VTA1Q9NP79 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
VTA1Q9NP79 AC007950.2-201ENST00000615045 2347 ntBASIC16.51■□□□□ 0.23
VTA1Q9NP79 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VTA1Q9NP79 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.51■□□□□ 0.23
VTA1Q9NP79 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.51■□□□□ 0.23
VTA1Q9NP79 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.51■□□□□ 0.23
VTA1Q9NP79 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VTA1Q9NP79 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.5■□□□□ 0.23
VTA1Q9NP79 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.5■□□□□ 0.23
VTA1Q9NP79 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.5■□□□□ 0.23
VTA1Q9NP79 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VTA1Q9NP79 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
VTA1Q9NP79 AC139712.1-201ENST00000378256 1875 ntBASIC16.5■□□□□ 0.23
VTA1Q9NP79 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VTA1Q9NP79 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC16.5■□□□□ 0.23
VTA1Q9NP79 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.5■□□□□ 0.23
VTA1Q9NP79 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VTA1Q9NP79 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VTA1Q9NP79 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC16.5■□□□□ 0.23
VTA1Q9NP79 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
VTA1Q9NP79 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
VTA1Q9NP79 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VTA1Q9NP79 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC16.5■□□□□ 0.23
VTA1Q9NP79 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VTA1Q9NP79 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC16.5■□□□□ 0.23
VTA1Q9NP79 AL592076.1-201ENST00000424448 303 ntBASIC16.5■□□□□ 0.23
VTA1Q9NP79 OR2R1P-201ENST00000441404 914 ntBASIC16.5■□□□□ 0.23
VTA1Q9NP79 AC104784.1-201ENST00000473096 294 ntBASIC16.5■□□□□ 0.23
VTA1Q9NP79 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC16.5■□□□□ 0.23
VTA1Q9NP79 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
VTA1Q9NP79 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC16.5■□□□□ 0.23
VTA1Q9NP79 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC16.5■□□□□ 0.23
VTA1Q9NP79 WDR7-208ENST00000589935 544 ntTSL 4 BASIC16.5■□□□□ 0.23
VTA1Q9NP79 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC16.5■□□□□ 0.23
VTA1Q9NP79 AC011491.1-203ENST00000637688 543 ntBASIC16.5■□□□□ 0.23
VTA1Q9NP79 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC16.5■□□□□ 0.23
VTA1Q9NP79 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VTA1Q9NP79 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
VTA1Q9NP79 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC16.5■□□□□ 0.23
VTA1Q9NP79 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.5■□□□□ 0.23
VTA1Q9NP79 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VTA1Q9NP79 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
VTA1Q9NP79 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VTA1Q9NP79 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VTA1Q9NP79 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VTA1Q9NP79 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VTA1Q9NP79 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
VTA1Q9NP79 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VTA1Q9NP79 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VTA1Q9NP79 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC16.49■□□□□ 0.23
VTA1Q9NP79 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC16.49■□□□□ 0.23
VTA1Q9NP79 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VTA1Q9NP79 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
VTA1Q9NP79 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VTA1Q9NP79 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VTA1Q9NP79 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
VTA1Q9NP79 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VTA1Q9NP79 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC16.49■□□□□ 0.23
VTA1Q9NP79 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
VTA1Q9NP79 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VTA1Q9NP79 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VTA1Q9NP79 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VTA1Q9NP79 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VTA1Q9NP79 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VTA1Q9NP79 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VTA1Q9NP79 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms