Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 ATF5-205ENST00000600336 682 ntTSL 2 BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 AP005019.2-201ENST00000615104 511 ntBASIC15.41■□□□□ 0.06
PCDH9Q9HC56 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 AL603764.1-201ENST00000636452 321 ntBASIC15.41■□□□□ 0.06
PCDH9Q9HC56 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 AL359881.3-201ENST00000602640 1721 ntBASIC15.4■□□□□ 0.06
PCDH9Q9HC56 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 COPE-202ENST00000349893 948 ntTSL 2 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 B9D1-203ENST00000395615 805 ntTSL 3 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 COX5BP8-201ENST00000416911 349 ntBASIC15.4■□□□□ 0.06
PCDH9Q9HC56 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 ACTG1P3-201ENST00000431775 1114 ntBASIC15.4■□□□□ 0.06
PCDH9Q9HC56 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 AC114812.1-204ENST00000449669 728 ntBASIC15.4■□□□□ 0.06
PCDH9Q9HC56 AC093433.1-201ENST00000458048 571 ntBASIC15.4■□□□□ 0.06
PCDH9Q9HC56 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 AC026434.2-201ENST00000506094 1078 ntBASIC15.4■□□□□ 0.06
PCDH9Q9HC56 RPSAP52-203ENST00000622976 1023 ntBASIC15.4■□□□□ 0.06
PCDH9Q9HC56 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
PCDH9Q9HC56 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 AC011474.4-201ENST00000623523 2076 ntBASIC15.39■□□□□ 0.05
PCDH9Q9HC56 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC15.39■□□□□ 0.05
PCDH9Q9HC56 GRAP-202ENST00000395635 834 ntTSL 2 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms