Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
MMP28Q9H239 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
MMP28Q9H239 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
MMP28Q9H239 GOLGA2P9-201ENST00000596977 1937 ntBASIC13.27□□□□□ -0.29
MMP28Q9H239 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC13.27□□□□□ -0.29
MMP28Q9H239 AL031595.1-201ENST00000623969 4709 ntBASIC13.27□□□□□ -0.29
MMP28Q9H239 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
MMP28Q9H239 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
MMP28Q9H239 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
MMP28Q9H239 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
MMP28Q9H239 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC13.26□□□□□ -0.29
MMP28Q9H239 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
MMP28Q9H239 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
MMP28Q9H239 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC13.26□□□□□ -0.29
MMP28Q9H239 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
MMP28Q9H239 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
MMP28Q9H239 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
MMP28Q9H239 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
MMP28Q9H239 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
MMP28Q9H239 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
MMP28Q9H239 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
MMP28Q9H239 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
MMP28Q9H239 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
MMP28Q9H239 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC13.26□□□□□ -0.29
MMP28Q9H239 STAT4-202ENST00000392320 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
MMP28Q9H239 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC13.26□□□□□ -0.29
MMP28Q9H239 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
MMP28Q9H239 C7orf57-202ENST00000420324 1957 ntTSL 5 BASIC13.26□□□□□ -0.29
MMP28Q9H239 TSEN15P1-201ENST00000423257 515 ntBASIC13.26□□□□□ -0.29
MMP28Q9H239 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC13.26□□□□□ -0.29
MMP28Q9H239 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
MMP28Q9H239 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC13.26□□□□□ -0.29
MMP28Q9H239 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
MMP28Q9H239 AL023775.1-201ENST00000454907 1746 ntBASIC13.26□□□□□ -0.29
MMP28Q9H239 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC13.26□□□□□ -0.29
MMP28Q9H239 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
MMP28Q9H239 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
MMP28Q9H239 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC13.26□□□□□ -0.29
MMP28Q9H239 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.26□□□□□ -0.29
MMP28Q9H239 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC13.26□□□□□ -0.29
MMP28Q9H239 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
MMP28Q9H239 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
MMP28Q9H239 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
MMP28Q9H239 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC13.26□□□□□ -0.29
MMP28Q9H239 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC13.26□□□□□ -0.29
MMP28Q9H239 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
MMP28Q9H239 AC004835.2-201ENST00000603762 682 ntBASIC13.26□□□□□ -0.29
MMP28Q9H239 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
MMP28Q9H239 AC093028.1-201ENST00000622998 982 ntBASIC13.26□□□□□ -0.29
MMP28Q9H239 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC13.26□□□□□ -0.29
MMP28Q9H239 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
MMP28Q9H239 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
MMP28Q9H239 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
MMP28Q9H239 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
MMP28Q9H239 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC13.26□□□□□ -0.29
MMP28Q9H239 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
MMP28Q9H239 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
MMP28Q9H239 C1QTNF1-203ENST00000354124 2714 ntAPPRIS P1 TSL 4 BASIC13.26□□□□□ -0.29
MMP28Q9H239 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
MMP28Q9H239 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
MMP28Q9H239 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC13.25□□□□□ -0.29
MMP28Q9H239 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC13.25□□□□□ -0.29
MMP28Q9H239 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC13.25□□□□□ -0.29
MMP28Q9H239 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
MMP28Q9H239 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 PCDHB18P-202ENST00000526308 3197 ntBASIC13.25□□□□□ -0.29
MMP28Q9H239 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 FOXO1B-201ENST00000504678 1527 ntBASIC13.25□□□□□ -0.29
MMP28Q9H239 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC13.25□□□□□ -0.29
MMP28Q9H239 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
MMP28Q9H239 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC13.25□□□□□ -0.29
MMP28Q9H239 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
MMP28Q9H239 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 HLA-H-201ENST00000383620 1096 ntBASIC13.25□□□□□ -0.29
MMP28Q9H239 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
MMP28Q9H239 AC004461.1-201ENST00000412461 403 ntBASIC13.25□□□□□ -0.29
MMP28Q9H239 KRT18P32-201ENST00000424695 1287 ntBASIC13.25□□□□□ -0.29
MMP28Q9H239 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC13.25□□□□□ -0.29
MMP28Q9H239 RNA5SP410-201ENST00000516285 106 ntBASIC13.25□□□□□ -0.29
MMP28Q9H239 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC13.25□□□□□ -0.29
MMP28Q9H239 AC004449.1-201ENST00000564240 433 ntBASIC13.25□□□□□ -0.29
MMP28Q9H239 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms