Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VMP1Q96GC9 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VMP1Q96GC9 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VMP1Q96GC9 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VMP1Q96GC9 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VMP1Q96GC9 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 NME2-201ENST00000393183 568 ntTSL 2 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 NAA50-208ENST00000497255 789 ntTSL 5 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VMP1Q96GC9 FUZ-207ENST00000526575 482 ntTSL 4 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VMP1Q96GC9 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VMP1Q96GC9 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 AL928921.2-201ENST00000641325 2442 ntBASIC14.38□□□□□ -0.11
VMP1Q96GC9 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VMP1Q96GC9 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VMP1Q96GC9 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VMP1Q96GC9 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VMP1Q96GC9 AC027601.5-201ENST00000624065 2482 ntBASIC14.38□□□□□ -0.11
VMP1Q96GC9 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VMP1Q96GC9 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VMP1Q96GC9 DNM3-202ENST00000367731 7613 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
VMP1Q96GC9 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
VMP1Q96GC9 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VMP1Q96GC9 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VMP1Q96GC9 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VMP1Q96GC9 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VMP1Q96GC9 APP-205ENST00000358918 2366 ntTSL 5 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VMP1Q96GC9 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VMP1Q96GC9 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VMP1Q96GC9 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
VMP1Q96GC9 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VMP1Q96GC9 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VMP1Q96GC9 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VMP1Q96GC9 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 ACTG1P3-201ENST00000431775 1114 ntBASIC14.37□□□□□ -0.11
VMP1Q96GC9 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 AP001063.1-201ENST00000568332 529 ntBASIC14.37□□□□□ -0.11
VMP1Q96GC9 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 AC009486.1-201ENST00000569860 813 ntBASIC14.37□□□□□ -0.11
VMP1Q96GC9 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 AL645728.2-202ENST00000641679 227 ntBASIC14.37□□□□□ -0.11
VMP1Q96GC9 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VMP1Q96GC9 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
VMP1Q96GC9 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VMP1Q96GC9 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VMP1Q96GC9 TKT-201ENST00000296289 1931 ntTSL 5 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 BX640514.1-201ENST00000583223 1918 ntBASIC14.37□□□□□ -0.11
VMP1Q96GC9 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VMP1Q96GC9 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VMP1Q96GC9 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VMP1Q96GC9 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
VMP1Q96GC9 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
VMP1Q96GC9 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
VMP1Q96GC9 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
VMP1Q96GC9 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
VMP1Q96GC9 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.36□□□□□ -0.11
VMP1Q96GC9 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
VMP1Q96GC9 AL138799.1-201ENST00000448213 1675 ntBASIC14.36□□□□□ -0.11
VMP1Q96GC9 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
VMP1Q96GC9 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms