Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 FAM86LP-201ENST00000478302 853 ntBASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 AC023310.3-201ENST00000557027 670 ntBASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 AC100756.1-201ENST00000562736 682 ntBASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 RARRES2P5-201ENST00000564013 466 ntBASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 AC138749.3-201ENST00000567691 622 ntBASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 AC116165.1-201ENST00000611806 668 ntBASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 DKFZP434A062-201ENST00000573103 5021 ntBASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP4Q8N3C7 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 AC005498.2-205ENST00000593218 784 ntBASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP4Q8N3C7 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLIP4Q8N3C7 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLIP4Q8N3C7 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms