Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
USP54Q70EL1 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP54Q70EL1 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC19.14■□□□□ 0.65
USP54Q70EL1 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USP54Q70EL1 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP54Q70EL1 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
USP54Q70EL1 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP54Q70EL1 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP54Q70EL1 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
USP54Q70EL1 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
USP54Q70EL1 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USP54Q70EL1 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC19.14■□□□□ 0.65
USP54Q70EL1 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP54Q70EL1 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC19.14■□□□□ 0.65
USP54Q70EL1 KRT18P46-201ENST00000435568 1279 ntBASIC19.14■□□□□ 0.65
USP54Q70EL1 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC19.14■□□□□ 0.65
USP54Q70EL1 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP54Q70EL1 GRPEL2P1-201ENST00000453145 339 ntBASIC19.14■□□□□ 0.65
USP54Q70EL1 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC19.14■□□□□ 0.65
USP54Q70EL1 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USP54Q70EL1 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
USP54Q70EL1 AC106047.2-201ENST00000511723 743 ntBASIC19.14■□□□□ 0.65
USP54Q70EL1 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC19.14■□□□□ 0.65
USP54Q70EL1 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USP54Q70EL1 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC19.14■□□□□ 0.65
USP54Q70EL1 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC19.14■□□□□ 0.65
USP54Q70EL1 AC006158.1-201ENST00000610661 249 ntBASIC19.14■□□□□ 0.65
USP54Q70EL1 AC091769.1-201ENST00000619576 568 ntBASIC19.14■□□□□ 0.65
USP54Q70EL1 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC19.14■□□□□ 0.65
USP54Q70EL1 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP54Q70EL1 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
USP54Q70EL1 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP54Q70EL1 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
USP54Q70EL1 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP54Q70EL1 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC19.13■□□□□ 0.65
USP54Q70EL1 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP54Q70EL1 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP54Q70EL1 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP54Q70EL1 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
USP54Q70EL1 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP54Q70EL1 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
USP54Q70EL1 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP54Q70EL1 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP54Q70EL1 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
USP54Q70EL1 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP54Q70EL1 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
USP54Q70EL1 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC19.13■□□□□ 0.65
USP54Q70EL1 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP54Q70EL1 NHP2-202ENST00000314397 599 ntTSL 2 BASIC19.13■□□□□ 0.65
USP54Q70EL1 USP17L6P-201ENST00000382470 1197 ntBASIC19.13■□□□□ 0.65
USP54Q70EL1 MIR1227-201ENST00000408484 88 ntBASIC19.13■□□□□ 0.65
USP54Q70EL1 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
USP54Q70EL1 OR52M2P-201ENST00000414298 959 ntBASIC19.13■□□□□ 0.65
USP54Q70EL1 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC19.13■□□□□ 0.65
USP54Q70EL1 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC19.13■□□□□ 0.65
USP54Q70EL1 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC19.13■□□□□ 0.65
USP54Q70EL1 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC19.13■□□□□ 0.65
USP54Q70EL1 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP54Q70EL1 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC19.13■□□□□ 0.65
USP54Q70EL1 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP54Q70EL1 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC19.13■□□□□ 0.65
USP54Q70EL1 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP54Q70EL1 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
USP54Q70EL1 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
USP54Q70EL1 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP54Q70EL1 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USP54Q70EL1 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP54Q70EL1 CTBP2P8-201ENST00000422584 1330 ntBASIC19.12■□□□□ 0.65
USP54Q70EL1 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
USP54Q70EL1 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC19.12■□□□□ 0.65
USP54Q70EL1 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC19.12■□□□□ 0.65
USP54Q70EL1 MARS-233ENST00000628866 2583 ntTSL 5 BASIC19.12■□□□□ 0.65
USP54Q70EL1 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP54Q70EL1 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP54Q70EL1 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USP54Q70EL1 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
USP54Q70EL1 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
USP54Q70EL1 COX20P1-201ENST00000366529 357 ntBASIC19.12■□□□□ 0.65
USP54Q70EL1 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USP54Q70EL1 GNG10P1-201ENST00000452289 199 ntBASIC19.12■□□□□ 0.65
USP54Q70EL1 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
USP54Q70EL1 RNA5SP406-201ENST00000516106 112 ntBASIC19.12■□□□□ 0.65
USP54Q70EL1 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USP54Q70EL1 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USP54Q70EL1 AC226150.1-201ENST00000544259 466 ntBASIC19.12■□□□□ 0.65
USP54Q70EL1 AL118516.1-201ENST00000564152 670 ntBASIC19.12■□□□□ 0.65
USP54Q70EL1 MSANTD2P1-201ENST00000445341 1368 ntBASIC19.12■□□□□ 0.65
USP54Q70EL1 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC19.12■□□□□ 0.65
USP54Q70EL1 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USP54Q70EL1 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC19.12■□□□□ 0.65
USP54Q70EL1 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP54Q70EL1 AC023824.1-201ENST00000562945 2975 ntBASIC19.12■□□□□ 0.65
USP54Q70EL1 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP54Q70EL1 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USP54Q70EL1 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP54Q70EL1 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP54Q70EL1 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC19.12■□□□□ 0.65
USP54Q70EL1 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
USP54Q70EL1 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USP54Q70EL1 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms