Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTR9Q6PD62 GPAA1P2-201ENST00000417923 928 ntBASIC17.68■□□□□ 0.42
CTR9Q6PD62 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC17.68■□□□□ 0.42
CTR9Q6PD62 AC099548.2-209ENST00000480264 625 ntBASIC17.68■□□□□ 0.42
CTR9Q6PD62 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTR9Q6PD62 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC17.68■□□□□ 0.42
CTR9Q6PD62 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTR9Q6PD62 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC17.68■□□□□ 0.42
CTR9Q6PD62 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC17.68■□□□□ 0.42
CTR9Q6PD62 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC17.68■□□□□ 0.42
CTR9Q6PD62 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC17.68■□□□□ 0.42
CTR9Q6PD62 AC009955.4-201ENST00000597192 544 ntBASIC17.68■□□□□ 0.42
CTR9Q6PD62 AC244093.1-201ENST00000610837 814 ntBASIC17.68■□□□□ 0.42
CTR9Q6PD62 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC17.68■□□□□ 0.42
CTR9Q6PD62 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTR9Q6PD62 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTR9Q6PD62 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CTR9Q6PD62 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTR9Q6PD62 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTR9Q6PD62 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTR9Q6PD62 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTR9Q6PD62 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTR9Q6PD62 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTR9Q6PD62 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTR9Q6PD62 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTR9Q6PD62 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTR9Q6PD62 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTR9Q6PD62 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC17.68■□□□□ 0.42
CTR9Q6PD62 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTR9Q6PD62 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC17.67■□□□□ 0.42
CTR9Q6PD62 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTR9Q6PD62 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CTR9Q6PD62 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTR9Q6PD62 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTR9Q6PD62 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTR9Q6PD62 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTR9Q6PD62 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
CTR9Q6PD62 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTR9Q6PD62 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTR9Q6PD62 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTR9Q6PD62 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTR9Q6PD62 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTR9Q6PD62 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTR9Q6PD62 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC17.67■□□□□ 0.42
CTR9Q6PD62 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC17.67■□□□□ 0.42
CTR9Q6PD62 NOP2-211ENST00000540228 668 ntTSL 2 BASIC17.67■□□□□ 0.42
CTR9Q6PD62 VPS18-202ENST00000558474 873 ntTSL 3 BASIC17.67■□□□□ 0.42
CTR9Q6PD62 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC17.67■□□□□ 0.42
CTR9Q6PD62 MIR3615-201ENST00000581999 87 ntBASIC17.67■□□□□ 0.42
CTR9Q6PD62 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CTR9Q6PD62 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC17.67■□□□□ 0.42
CTR9Q6PD62 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CTR9Q6PD62 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTR9Q6PD62 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CTR9Q6PD62 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTR9Q6PD62 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CTR9Q6PD62 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTR9Q6PD62 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTR9Q6PD62 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTR9Q6PD62 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CTR9Q6PD62 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CTR9Q6PD62 AC006058.4-201ENST00000624016 1670 ntBASIC17.67■□□□□ 0.42
CTR9Q6PD62 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CTR9Q6PD62 GRN-222ENST00000639447 1314 ntTSL 2 BASIC17.67■□□□□ 0.42
CTR9Q6PD62 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTR9Q6PD62 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTR9Q6PD62 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CTR9Q6PD62 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC17.67■□□□□ 0.42
CTR9Q6PD62 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CTR9Q6PD62 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CTR9Q6PD62 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC17.66■□□□□ 0.42
CTR9Q6PD62 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CTR9Q6PD62 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC17.66■□□□□ 0.42
CTR9Q6PD62 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CTR9Q6PD62 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CTR9Q6PD62 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CTR9Q6PD62 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CTR9Q6PD62 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CTR9Q6PD62 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CTR9Q6PD62 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
CTR9Q6PD62 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CTR9Q6PD62 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CTR9Q6PD62 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC17.66■□□□□ 0.42
CTR9Q6PD62 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC17.66■□□□□ 0.42
CTR9Q6PD62 PTPA-218ENST00000435132 618 ntTSL 2 BASIC17.66■□□□□ 0.42
CTR9Q6PD62 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC17.66■□□□□ 0.42
CTR9Q6PD62 AC004898.1-201ENST00000451057 766 ntBASIC17.66■□□□□ 0.42
CTR9Q6PD62 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC17.66■□□□□ 0.42
CTR9Q6PD62 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CTR9Q6PD62 DUX4L46-201ENST00000566845 751 ntBASIC17.66■□□□□ 0.42
CTR9Q6PD62 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC17.66■□□□□ 0.42
CTR9Q6PD62 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC17.66■□□□□ 0.42
CTR9Q6PD62 AC007663.3-201ENST00000609632 465 ntBASIC17.66■□□□□ 0.42
CTR9Q6PD62 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC17.66■□□□□ 0.42
CTR9Q6PD62 AL162426.1-201ENST00000624141 743 ntBASIC17.66■□□□□ 0.42
CTR9Q6PD62 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
CTR9Q6PD62 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC17.66■□□□□ 0.42
CTR9Q6PD62 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC17.66■□□□□ 0.42
CTR9Q6PD62 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CTR9Q6PD62 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms